Moved from sci-biology/njplot-unrooted to sci-biology/njplot.

5 files changed, 88 insertions, 0 deletions

diff --git a/sci-biology/njplot/ChangeLog b/sci-biology/njplot/ChangeLog
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+++ b/sci-biology/njplot/ChangeLog
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+# ChangeLog for sci-biology/njplot-unrooted
+# Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/njplot/ChangeLog,v 1.1 2005/01/09 18:30:03 ribosome Exp $
+
+*njplot-1 (09 Jan 2005)
+
+  09 Jan 2005; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+  +njplot-1.ebuild:
+  Moved from sci-biology/njplot-unrooted to sci-biology/njplot.
+
+*njplot-unrooted-1 (23 Dec 2004)
+
+  23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+  +njplot-unrooted-1.ebuild:
+  Moved from app-sci/njplot-unrooted to sci-biology/njplot-unrooted.
+
+*njplot-unrooted-1 (06 Oct 2004)
+
+  06 Oct 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+  +njplot-unrooted-1.ebuild:
+  Initial import.
+
diff --git a/sci-biology/njplot/Manifest b/sci-biology/njplot/Manifest
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index 000000000000..7e9805a9bf03
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+++ b/sci-biology/njplot/Manifest
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+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
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+MD5 57201e611df919577b3e0730db02d3c4 ChangeLog 580
+MD5 a1727bd238aff0cb1debdf9b11b21b5e metadata.xml 609
+MD5 72fe56f3a4074cf7324d469c568a242a files/digest-njplot-unrooted-1 69
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diff --git a/sci-biology/njplot/files/digest-njplot-1 b/sci-biology/njplot/files/digest-njplot-1
new file mode 100644
index 000000000000..5d1ded51f641
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+++ b/sci-biology/njplot/files/digest-njplot-1
@@ -0,0 +1 @@
+MD5 bd8228dbc78ab5858154063517d4b6e1 njplot-unrooted-1.tar.bz2 34352
diff --git a/sci-biology/njplot/metadata.xml b/sci-biology/njplot/metadata.xml
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index 000000000000..b0cf95961f50
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+++ b/sci-biology/njplot/metadata.xml
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+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer>
+		<email>ribosome@gentoo.org</email>
+		<name>Olivier Fisette</name>
+	</maintainer>
+	<herd>sci</herd>
+	<longdescription>
+		NJplot is a tree drawing program able to draw any phylogenetic tree
+		expressed in the Newick phylogenetic tree format (e.g., the format used
+		by the PHYLIP package). NJplot is especially convenient for rooting the
+		unrooted trees obtained from parsimony, distance or maximum likelihood
+		tree-building methods.
+	</longdescription>
+</pkgmetadata>
diff --git a/sci-biology/njplot/njplot-1.ebuild b/sci-biology/njplot/njplot-1.ebuild
new file mode 100644
index 000000000000..7b6583018a1e
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+++ b/sci-biology/njplot/njplot-1.ebuild
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+# Copyright 1999-2005 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/njplot/njplot-1.ebuild,v 1.1 2005/01/09 18:30:03 ribosome Exp $
+
+DESCRIPTION="A phylogenetic tree drawing program which supports tree rooting"
+HOMEPAGE="http://pbil.univ-lyon1.fr/software/njplot.html"
+SRC_URI="mirror://gentoo/njplot-unrooted-1.tar.bz2"
+LICENSE="public-domain"
+
+SLOT="0"
+KEYWORDS="~x86"
+IUSE=""
+
+DEPEND="sci-biology/ncbi-tools
+	virtual/x11"
+
+src_unpack() {
+	unpack ${A}
+	cd ${S}
+	sed -i -e "s%njplot.help%/usr/share/doc/${PF}/njplot.help%" njplot-vib.c
+}
+
+src_compile() {
+	make -e || die
+}
+
+src_install() {
+	dobin newicktops njplot unrooted
+
+	insinto /usr/share/doc/${PF}
+	doins njplot.help
+
+	insinto /usr/share/${PN}
+	doins test.ph
+}