Version Bump, fixes problems with format security, #542666

(Portage version: 2.2.18/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)

3 files changed, 56 insertions, 8 deletions

diff --git a/sci-mathematics/nauty/ChangeLog b/sci-mathematics/nauty/ChangeLog
index 166df2033dea..84478a6be253 100644
--- a/sci-mathematics/nauty/ChangeLog
+++ b/sci-mathematics/nauty/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-mathematics/nauty
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/nauty/ChangeLog,v 1.5 2014/08/10 20:23:44 slyfox Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/nauty/ChangeLog,v 1.6 2015/03/09 10:29:25 jlec Exp $
+
+*nauty-2.5.9 (09 Mar 2015)
+
+  09 Mar 2015; Justin Lecher <jlec@gentoo.org> +nauty-2.5.9.ebuild,
+  metadata.xml:
+  Version Bump, fixes problems with format security, #542666
 
   10 Aug 2014; Sergei Trofimovich <slyfox@gentoo.org> nauty-2.4.2.ebuild:
   QA: drop trailing '.' from DESCRIPTION
diff --git a/sci-mathematics/nauty/metadata.xml b/sci-mathematics/nauty/metadata.xml
index 0c5be24442aa..186d7a91db3c 100644
--- a/sci-mathematics/nauty/metadata.xml
+++ b/sci-mathematics/nauty/metadata.xml
@@ -1,12 +1,12 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-<maintainer>
-  <email>tomka@gentoo.org</email>
-  <name>Thomas Kahle</name>
-</maintainer>
-<herd>sci-mathematics</herd>
-<longdescription lang="en">
+  <maintainer>
+    <email>tomka@gentoo.org</email>
+    <name>Thomas Kahle</name>
+  </maintainer>
+  <herd>sci-mathematics</herd>
+  <longdescription lang="en">
 nauty is a program for computing automorphism groups of graphs and digraphs. It can also produce a
 canonical labelling.
 
diff --git a/sci-mathematics/nauty/nauty-2.5.9.ebuild b/sci-mathematics/nauty/nauty-2.5.9.ebuild
new file mode 100644
index 000000000000..fd11ad7114d3
--- /dev/null
+++ b/sci-mathematics/nauty/nauty-2.5.9.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/nauty/nauty-2.5.9.ebuild,v 1.1 2015/03/09 10:29:25 jlec Exp $
+
+EAPI=5
+
+inherit versionator
+
+MY_PV=$(replace_version_separator 2 'r')
+MY_PV=$(delete_version_separator 1 ${MY_PV})
+
+DESCRIPTION="Computing automorphism groups of graphs and digraphs"
+HOMEPAGE="http://pallini.di.uniroma1.it/"
+SRC_URI="http://cs.anu.edu.au/~bdm/${PN}/${PN}${MY_PV}.tar.gz"
+
+LICENSE="nauty"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+S="${WORKDIR}/${PN}${MY_PV}"
+
+src_prepare () {
+	sed \
+		-e "s/^LDFLAGS=.*/LDFLAGS=${LDFLAGS}/" \
+		-e 's:${CC} -o:${CC} ${LDFLAGS} -o:g' \
+		-e 's:${LDFLAGS}$::g' \
+		-i makefile.in || die
+}
+
+src_test () {
+	emake checks
+	./runalltests
+}
+
+src_install () {
+	dobin addedgeg amtog biplabg catg complg copyg countg \
+		deledgeg directg dreadnaut dretog genbg geng genrang \
+		gentourng labelg listg multig newedgeg NRswitchg pickg \
+		planarg shortg showg
+	dodoc README formats.txt nug*.pdf
+}