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* sci-biology/rnaview: Respect CFLAGS, #429536; Bump to EAPI=4Justin Lecher2012-08-031-7/+19
| | | | (Portage version: 2.2.0_alpha120/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/rnaview: Respect CFLAGS, #429536; Bump to EAPI=4Justin Lecher2012-08-033-36/+93
| | | | (Portage version: 2.2.0_alpha120/cvs/Linux x86_64)
* sci-biology/tree-puzzle: Mask stupid test, which fails due to precision ↵Justin Lecher2012-08-011-8/+9
| | | | | | reached depending on optimization used at compile time, #297646; fix move to EAPI=4, #429354 (Portage version: 2.2.0_alpha120/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/tree-puzzle: Mask stupid test, which fails due to precision ↵Justin Lecher2012-08-013-3/+30
| | | | | | reached depending on optimization used at compile time, #297646; fix move to EAPI=4, #429354 (Portage version: 2.2.0_alpha120/cvs/Linux x86_64)
* sci-biology/finchtv: Use QA_PREBUILT for binary packagesJustin Lecher2012-07-241-9/+10
| | | | (Portage version: 2.2.0_alpha120/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/finchtv: Use QA_PREBUILT for binary packagesJustin Lecher2012-07-243-11/+16
| | | | (Portage version: 2.2.0_alpha120/cvs/Linux x86_64)
* Remove packagePacho Ramos2012-07-214-118/+0
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* sci-biology/primer3: Version BUmpJustin Lecher2012-07-191-9/+22
| | | | (Portage version: 2.2.0_alpha120/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/primer3: Version BUmpJustin Lecher2012-07-193-10/+62
| | | | (Portage version: 2.2.0_alpha120/cvs/Linux x86_64)
* sci-biology/tophat: Version BUmp; do parallel builds; handle debug buildJustin Lecher2012-07-191-12/+16
| | | | (Portage version: 2.2.0_alpha120/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/tophat: Version BUmp; do parallel builds; handle debug buildJustin Lecher2012-07-195-14/+174
| | | | (Portage version: 2.2.0_alpha120/cvs/Linux x86_64)
* sci-biology/vcftools: Version BUmp, fix build systemJustin Lecher2012-07-191-9/+13
| | | | (Portage version: 2.2.0_alpha120/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/vcftools: Version BUmp, fix build systemJustin Lecher2012-07-193-1/+104
| | | | (Portage version: 2.2.0_alpha120/cvs/Linux x86_64)
* sci-biology/goby-cpp: Version Bump, handle static-libsJustin Lecher2012-07-191-11/+14
| | | | (Portage version: 2.2.0_alpha120/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/goby-cpp: Version Bump, handle static-libsJustin Lecher2012-07-192-1/+38
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* Fix broken Manifest entry for infernal-1.0.2-perl-5.16.patch.Zac Medico2012-07-161-5/+4
| | | | (Portage version: 2.2.0_alpha118/cvs/Linux i686, signed Manifest commit with key 0xAE5719A3)
* sci-biology/infernal: Cleaned oldJustin Lecher2012-07-151-5/+4
| | | | (Portage version: 2.2.0_alpha118/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/infernal: Cleaned oldJustin Lecher2012-07-152-31/+4
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* sci-biology/infernal: Fix cvs updates of commiter names in patches, #426588Justin Lecher2012-07-151-13/+13
| | | | (Portage version: 2.2.0_alpha118/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/infernal: Fix cvs updates of commiter names in patches, #426588Justin Lecher2012-07-152-8/+16
| | | | (Portage version: 2.2.0_alpha118/cvs/Linux x86_64)
* sci-biology/psipred: Cleaned SRC_URIJustin Lecher2012-07-111-4/+15
| | | | (Portage version: 2.2.0_alpha116/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/psipred: Cleaned SRC_URIJustin Lecher2012-07-112-5/+7
| | | | (Portage version: 2.2.0_alpha116/cvs/Linux x86_64)
* add missing test to IUSEMichael Sterrett2012-07-111-14/+3
| | | | (Portage version: 2.1.10.65/cvs/Linux x86_64, unsigned Manifest commit)
* add missing test to IUSEMichael Sterrett2012-07-113-5/+9
| | | | (Portage version: 2.1.10.65/cvs/Linux x86_64)
* sci-biology/psipred: Version BumpJustin Lecher2012-07-101-20/+24
| | | | (Portage version: 2.2.0_alpha116/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/psipred: Version BumpJustin Lecher2012-07-104-9/+72
| | | | (Portage version: 2.2.0_alpha116/cvs/Linux x86_64)
* sci-biology/vienna-rna: Cleaned oldJustin Lecher2012-07-101-6/+14
| | | | (Portage version: 2.2.0_alpha116/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/vienna-rna: Cleaned oldJustin Lecher2012-07-104-161/+7
| | | | (Portage version: 2.2.0_alpha116/cvs/Linux x86_64)
* Marking vienna-rna-1.8.5 ppc for bug 393867Brent Baude2012-07-101-14/+14
| | | | (Portage version: 2.1.10.65/cvs/Linux ppc64, unsigned Manifest commit)
* Marking vienna-rna-1.8.5 ppc for bug 393867Brent Baude2012-07-102-3/+6
| | | | (Portage version: 2.1.10.65/cvs/Linux ppc64)
* sci-biology/allpathslg: Version bump, fix compilation errors with gcc-4.7, ↵Justin Lecher2012-07-091-11/+14
| | | | | | #425472 (Portage version: 2.2.0_alpha116/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/allpathslg: Version bump, fix compilation errors with gcc-4.7, ↵Justin Lecher2012-07-092-1/+40
| | | | | | #425472 (Portage version: 2.2.0_alpha116/cvs/Linux x86_64)
* sci-biology/mira: Drop oldJustin Lecher2012-07-081-10/+17
| | | | (Portage version: 2.2.0_alpha116/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/mira: Drop oldJustin Lecher2012-07-083-103/+5
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* sci-biology/amos: Add fix for gcc-4.7, #425264; cleaned oldJustin Lecher2012-07-081-16/+11
| | | | (Portage version: 2.2.0_alpha116/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/amos: Add fix for gcc-4.7, #425264; cleaned oldJustin Lecher2012-07-087-218/+32
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* sci-biology/seaview: Version Bump imported from sci overlay, prepared by ↵Justin Lecher2012-07-041-10/+13
| | | | | | Martin Mokrejs, #351005; fixes also compilation with gcc47, #424727 (Portage version: 2.2.0_alpha115/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/seaview: Version Bump imported from sci overlay, prepared by ↵Justin Lecher2012-07-042-2/+79
| | | | | | Martin Mokrejs, #351005; fixes also compilation with gcc47, #424727 (Portage version: 2.2.0_alpha115/cvs/Linux x86_64)
* sci-biology/plink: Moved to EAPI=4, add fix for building with gcc-4.7, #424709Justin Lecher2012-07-041-6/+18
| | | | (Portage version: 2.2.0_alpha115/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/plink: Moved to EAPI=4, add fix for building with gcc-4.7, #424709Justin Lecher2012-07-043-10/+79
| | | | (Portage version: 2.2.0_alpha115/cvs/Linux x86_64)
* sci-biology/hmmer: Fix the patch, thanks xarthisius and bonsaikitten for helpJustin Lecher2012-06-281-6/+6
| | | | (Portage version: 2.2.0_alpha114/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/hmmer: Fix the patch, thanks xarthisius and bonsaikitten for helpJustin Lecher2012-06-283-136/+8
| | | | (Portage version: 2.2.0_alpha114/cvs/Linux x86_64)
* next patchJustin Lecher2012-06-281-0/+132
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* next tryJustin Lecher2012-06-281-5/+5
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* Plain patchJustin Lecher2012-06-281-5/+5
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* Fix patchJustin Lecher2012-06-281-5/+5
| | | | (Portage version: 2.2.0_alpha114/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* Fix patchJustin Lecher2012-06-282-10/+6
| | | | (Portage version: 2.2.0_alpha114/cvs/Linux x86_64)
* fix patch againJustin Lecher2012-06-281-5/+5
| | | | (Portage version: 2.2.0_alpha114/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* fix patch againJustin Lecher2012-06-282-6/+10
| | | | (Portage version: 2.2.0_alpha114/cvs/Linux x86_64)
* sci-biology/hmmer: Fix patch, screwed VCS tags, #423983Justin Lecher2012-06-281-5/+5
| | | | (Portage version: 2.2.0_alpha114/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)