From 30fff7bc257db67e099de79c90c20575ce8d9187 Mon Sep 17 00:00:00 2001 From: Justin Lecher Date: Thu, 26 Sep 2013 13:55:24 +0000 Subject: dev-lang/R: Version BUmp, #486064 (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!) --- dev-lang/R/ChangeLog | 7 +- dev-lang/R/R-3.0.2.ebuild | 206 ++++++++++++++++++++++++++++++++++++++++++++++ dev-lang/R/metadata.xml | 12 +-- 3 files changed, 218 insertions(+), 7 deletions(-) create mode 100644 dev-lang/R/R-3.0.2.ebuild (limited to 'dev-lang/R') diff --git a/dev-lang/R/ChangeLog b/dev-lang/R/ChangeLog index a9af427d139a..cfcf4dbf4cdc 100644 --- a/dev-lang/R/ChangeLog +++ b/dev-lang/R/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for dev-lang/R # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/dev-lang/R/ChangeLog,v 1.218 2013/09/24 16:13:24 bicatali Exp $ +# $Header: /var/cvsroot/gentoo-x86/dev-lang/R/ChangeLog,v 1.219 2013/09/26 13:55:24 jlec Exp $ + +*R-3.0.2 (26 Sep 2013) + + 26 Sep 2013; Justin Lecher +R-3.0.2.ebuild, metadata.xml: + Version BUmp, #486064 *R-3.0.1-r1 (24 Sep 2013) diff --git a/dev-lang/R/R-3.0.2.ebuild b/dev-lang/R/R-3.0.2.ebuild new file mode 100644 index 000000000000..b418fbd5e24d --- /dev/null +++ b/dev-lang/R/R-3.0.2.ebuild @@ -0,0 +1,206 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/dev-lang/R/R-3.0.2.ebuild,v 1.1 2013/09/26 13:55:24 jlec Exp $ + +EAPI=5 + +inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs + +BCP=${PN}-20130129.bash_completion +DESCRIPTION="Language and environment for statistical computing and graphics" +HOMEPAGE="http://www.r-project.org/" +SRC_URI=" + mirror://cran/src/base/R-3/${P}.tar.gz + bash-completion? ( http://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2 )" + +LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1" +SLOT="0" +KEYWORDS="~alpha ~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-fbsd ~x86-linux ~x64-macos" +IUSE="bash-completion cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X" +REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )" + +CDEPEND=" + app-arch/bzip2 + app-text/ghostscript-gpl + dev-libs/libpcre + app-misc/realpath + virtual/blas + cairo? ( x11-libs/cairo[X] x11-libs/pango ) + icu? ( dev-libs/icu ) + jpeg? ( virtual/jpeg:0 ) + lapack? ( virtual/lapack ) + perl? ( dev-lang/perl ) + png? ( media-libs/libpng ) + readline? ( sys-libs/readline ) + tk? ( dev-lang/tk ) + X? ( x11-libs/libXmu x11-misc/xdg-utils )" + +DEPEND="${CDEPEND} + virtual/pkgconfig + doc? ( + virtual/latex-base + dev-texlive/texlive-fontsrecommended + )" + +RDEPEND="${CDEPEND} + ( || ( =sys-libs/zlib-1.2.5.1-r2[minizip] ) ) + app-arch/xz-utils + java? ( >=virtual/jre-1.5 )" + +RESTRICT="minimal? ( test )" + +R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}" + +pkg_setup() { + if use openmp; then + FORTRAN_NEED_OPENMP=1 + tc-has-openmp || die "Please enable openmp support in your compiler" + fi + fortran-2_pkg_setup + filter-ldflags -Wl,-Bdirect -Bdirect + # avoid using existing R installation + unset R_HOME + # Temporary fix for bug #419761 + if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then + append-flags -fno-ipa-cp-clone + fi +} + +src_prepare() { + # gentoo bug #322965 (not applied upstream) + # https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14505 + epatch "${FILESDIR}"/${PN}-2.11.1-parallel.patch + + # respect ldflags (not applied upstream) + # https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14506 + epatch "${FILESDIR}"/${PN}-2.12.1-ldflags.patch + + # gentoo bug #383431 + # https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14951 + epatch "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch + + # https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14953 + epatch "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch + + # fix packages.html for doc (gentoo bug #205103) + sed -i \ + -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \ + src/library/tools/R/Rd.R || die + + # fix Rscript path when installed (gentoo bug #221061) + sed -i \ + -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \ + src/unix/Makefile.in || die "sed unix Makefile failed" + + # fix HTML links to manual (gentoo bug #273957) + sed -i \ + -e 's:\.\./manual/:manual/:g' \ + $(grep -Flr ../manual/ doc) || die "sed for HTML links failed" + + use lapack && \ + export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)" + + if use X; then + export R_BROWSER="$(type -p xdg-open)" + export R_PDFVIEWER="$(type -p xdg-open)" + fi + use perl && \ + export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}" + + # don't search /usr/local + sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die + # Fix for Darwin (OS X) + if use prefix; then + if [[ ${CHOST} == *-darwin* ]] ; then + sed -i \ + -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \ + -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \ + -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \ + -e "/SHLIB_EXT/s/\.so/.dylib/" \ + configure.ac || die + # sort of "undo" 2.14.1-rmath-shared.patch + sed -i \ + -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \ + src/nmath/standalone/Makefile.in || die + else + append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib" + fi + fi + AT_M4DIR=m4 eaclocal + eautoconf +} + +src_configure() { + econf \ + --enable-byte-compiled-packages \ + --enable-R-shlib \ + --disable-R-framework \ + --with-system-zlib \ + --with-system-bzlib \ + --with-system-pcre \ + --with-system-xz \ + --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \ + --docdir="${EPREFIX}/usr/share/doc/${PF}" \ + rdocdir="${EPREFIX}/usr/share/doc/${PF}" \ + $(use_enable nls) \ + $(use_enable openmp) \ + $(use_enable profile R-profiling) \ + $(use_enable profile memory-profiling) \ + $(use_enable static-libs static) \ + $(use_enable static-libs R-static-lib) \ + $(use_with cairo) \ + $(use_with icu ICU) \ + $(use_with jpeg jpeglib) \ + $(use_with lapack) \ + $(use_with !minimal recommended-packages) \ + $(use_with png libpng) \ + $(use_with readline) \ + $(use_with tiff libtiff) \ + $(use_with tk tcltk) \ + $(use_with X x) +} + +src_compile() { + export VARTEXFONTS="${T}/fonts" + emake AR="$(tc-getAR)" + emake -C src/nmath/standalone shared $(use static-libs && echo static) AR="$(tc-getAR)" + use doc && emake info pdf +} + +src_install() { + default + emake -j1 -C src/nmath/standalone DESTDIR="${D}" install + + if use doc; then + emake DESTDIR="${D}" install-info install-pdf + dosym ../manual /usr/share/doc/${PF}/html/manual + fi + + cat > 99R <<-EOF + LDPATH=${R_DIR}/lib + R_HOME=${R_DIR} + EOF + doenvd 99R + use bash-completion && newbashcomp "${WORKDIR}"/${BCP} ${PN} + # The buildsystem has a different understanding of install_names than what + # we require. Since it builds modules like shared objects (wrong), many + # objects (all modules) get an incorrect install_name. Fixing the build + # system here is not really trivial. + if [[ ${CHOST} == *-darwin* ]] ; then + local mod + pushd "${ED}"/usr/lib/R > /dev/null + for mod in $(find . -name "*.dylib") ; do + mod=${mod#./} + install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \ + "${mod}" + done + popd > /dev/null + fi +} + +pkg_postinst() { + if use java; then + einfo "Re-initializing java paths for ${P}" + R CMD javareconf + fi +} diff --git a/dev-lang/R/metadata.xml b/dev-lang/R/metadata.xml index 5d205a8da7fb..1deadcbddd09 100644 --- a/dev-lang/R/metadata.xml +++ b/dev-lang/R/metadata.xml @@ -1,12 +1,12 @@ -sci-mathematics - - calchan@gentoo.org - Denis Dupeyron - - + sci-mathematics + + calchan@gentoo.org + Denis Dupeyron + + R is GNU S, a system for statistical computation and graphics. It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run -- cgit v1.2.3-65-gdbad