From 844c0040e532e24842cd8c4525feec2fd2b2051c Mon Sep 17 00:00:00 2001
From: Justin Lecher <jlec@gentoo.org>
Date: Fri, 7 Oct 2011 09:01:12 +0000
Subject: Moved to autotools-utils.eclass in order to have correct .a/la file
 handling, #385865

(Portage version: 2.2.0_alpha62/cvs/Linux x86_64)
---
 sci-chemistry/coot/ChangeLog            |   8 +-
 sci-chemistry/coot/coot-0.6.2-r1.ebuild | 162 ++++++++++++++++++++++++++++++++
 2 files changed, 169 insertions(+), 1 deletion(-)
 create mode 100644 sci-chemistry/coot/coot-0.6.2-r1.ebuild

(limited to 'sci-chemistry/coot')

diff --git a/sci-chemistry/coot/ChangeLog b/sci-chemistry/coot/ChangeLog
index 41fde89bbf92..256d1c1d4212 100644
--- a/sci-chemistry/coot/ChangeLog
+++ b/sci-chemistry/coot/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-chemistry/coot
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/ChangeLog,v 1.43 2011/10/06 12:04:07 ssuominen Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/ChangeLog,v 1.44 2011/10/07 09:01:12 jlec Exp $
+
+*coot-0.6.2-r1 (07 Oct 2011)
+
+  07 Oct 2011; Justin Lecher <jlec@gentoo.org> +coot-0.6.2-r1.ebuild:
+  Moved to autotools-utils.eclass in order to have correct .a/la file handling,
+  #385865
 
   06 Oct 2011; Samuli Suominen <ssuominen@gentoo.org> coot-0.6.2.ebuild:
   Pass -Wl,--no-as-needed with USE="openmp" and <sys-devel/libtool-2.4-r2 wrt
diff --git a/sci-chemistry/coot/coot-0.6.2-r1.ebuild b/sci-chemistry/coot/coot-0.6.2-r1.ebuild
new file mode 100644
index 000000000000..4e11b9c11ef9
--- /dev/null
+++ b/sci-chemistry/coot/coot-0.6.2-r1.ebuild
@@ -0,0 +1,162 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/coot-0.6.2-r1.ebuild,v 1.1 2011/10/07 09:01:12 jlec Exp $
+
+EAPI=3
+
+PYTHON_DEPEND="2"
+
+inherit autotools-utils python toolchain-funcs versionator
+
+MY_S2_PV=$(replace_version_separator 2 - ${PV})
+MY_S2_P=${PN}-${MY_S2_PV/pre1/pre-1}
+MY_S_P=${MY_S2_P}-${PR/r/revision-}
+MY_PV=${PV}
+MY_P=${PN}-${MY_PV}
+
+DESCRIPTION="Crystallographic Object-Oriented Toolkit for model building, completion and validation"
+HOMEPAGE="http://www.biop.ox.ac.uk/coot/"
+SRC_URI="
+	http://www.biop.ox.ac.uk/coot/software/source/releases/${MY_P}.tar.gz
+	test? ( http://dev.gentoo.org/~jlec/distfiles/greg-data-${PV}.tar.gz  )"
+
+SLOT="0"
+LICENSE="GPL-3"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="+openmp static-libs test"
+
+AUTOTOOLS_IN_SOURCE_BUILD=1
+
+SCIDEPS="
+	>=sci-libs/ccp4-libs-6.1
+	>=sci-libs/clipper-20090520
+	>=sci-libs/coot-data-2
+	>=sci-libs/gsl-1.3
+	>=sci-libs/mmdb-1.23
+	sci-libs/ssm
+	<sci-libs/monomer-db-1
+	sci-chemistry/reduce
+	<sci-chemistry/refmac-5.6
+	sci-chemistry/probe"
+
+XDEPS="
+	gnome-base/libgnomecanvas
+	gnome-base/librsvg:2
+	media-libs/libpng
+	media-libs/freeglut
+	x11-libs/gtk+:2
+	x11-libs/gtkglext"
+
+SCHEMEDEPS="
+	dev-scheme/net-http
+	dev-scheme/guile-gui
+	>=dev-scheme/guile-lib-0.1.6
+	dev-scheme/guile-www
+	>=x11-libs/guile-gtk-2.1"
+
+RDEPEND="
+	${SCIDEPS}
+	${XDEPS}
+	${SCHEMEDEPS}
+	dev-python/pygtk:2
+	>=dev-libs/gmp-4.2.2-r2
+	>=net-misc/curl-7.19.6
+	net-dns/libidn"
+DEPEND="${RDEPEND}
+	dev-lang/swig
+	sys-devel/bc
+	test? ( dev-scheme/greg )"
+
+S="${WORKDIR}/${MY_P}"
+
+pkg_setup() {
+	if use openmp; then
+		tc-has-openmp || die "Please use an OPENMP capable compiler"
+		has_version '<sys-devel/libtool-2.4-r2' && append-ldflags $(no-as-needed)
+	fi
+	python_set_active_version 2
+}
+
+PATCHES=(
+	"${FILESDIR}"/${PV}-clipper-config.patch
+	"${FILESDIR}"/${PV}-mmdb-config.patch
+	"${FILESDIR}"/${PV}-gl.patch
+	"${FILESDIR}"/${PV}-test.patch
+	"${FILESDIR}"/${PV}-ssm.patch
+	"${FILESDIR}"/${PV}-libpng15.patch
+	)
+
+src_prepare() {
+	autotools-utils_src_prepare
+
+	eautoreconf
+}
+
+src_configure() {
+	# All the --with's are used to activate various parts.
+	# Yes, this is broken behavior.
+	local myeconfargs=(
+		--includedir='${prefix}/include/coot'
+		--with-gtkcanvas-prefix="${EPREFIX}/usr"
+		--with-gtkgl-prefix="${EPREFIX}/usr"
+		--with-guile
+		--with-python="${EPREFIX}/usr"
+		--with-guile-gtk
+		--with-gtk2
+		--with-pygtk
+		$(use_enable openmp)
+		)
+	autotools-utils_src_configure
+}
+
+src_compile() {
+	autotools-utils_src_compile
+	python_convert_shebangs $(python_get_version) "${S}"/src/coot_gtk2.py
+	cp "${S}"/src/coot_gtk2.py python/coot.py || die
+}
+
+src_test() {
+	source "${EPREFIX}/etc/profile.d/40ccp4.setup.sh"
+	mkdir "${T}"/coot_test
+
+	export COOT_STANDARD_RESIDUES="${S}/standard-residues.pdb"
+	export COOT_SCHEME_DIR="${S}/scheme/"
+	export COOT_RESOURCES_FILE="${S}/cootrc"
+	export COOT_PIXMAPS_DIR="${S}/pixmaps"
+	export COOT_DATA_DIR="${S}"
+	export COOT_PYTHON_DIR="${S}/python"
+	export PYTHONPATH="${COOT_PYTHON_DIR}:${PYTHONPATH}"
+	export PYTHONHOME="${EPREFIX}"/usr
+	export CCP4_SCR="${T}"/coot_test
+	export CLIBD_MON="${EPREFIX}/usr/share/ccp4/data/monomers/"
+	export SYMINFO="${S}/syminfo.lib"
+
+	export COOT_TEST_DATA_DIR="${WORKDIR}"/data/greg-data
+
+	cat > command-line-greg.scm <<- EOF
+	(use-modules (ice-9 greg))
+		(set! greg-tools (list "greg-tests"))
+			(set! greg-debug #t)
+			(set! greg-verbose 5)
+			(let ((r (greg-test-run)))
+				(if r
+				(coot-real-exit 0)
+				(coot-real-exit 1)))
+	EOF
+
+	einfo "Running test with following paths ..."
+	einfo "COOT_STANDARD_RESIDUES $COOT_STANDARD_RESIDUES"
+	einfo "COOT_SCHEME_DIR $COOT_SCHEME_DIR"
+	einfo "COOT_RESOURCES_FILE $COOT_RESOURCES_FILE"
+	einfo "COOT_PIXMAPS_DIR $COOT_PIXMAPS_DIR"
+	einfo "COOT_DATA_DIR $COOT_DATA_DIR"
+	einfo "COOT_PYTHON_DIR $COOT_PYTHON_DIR"
+	einfo "PYTHONPATH $PYTHONPATH"
+	einfo "PYTHONHOME $PYTHONHOME"
+	einfo "CCP4_SCR ${CCP4_SCR}"
+	einfo "CLIBD_MON ${CLIBD_MON}"
+	einfo "SYMINFO ${SYMINFO}"
+
+	"${S}"/src/coot-real --no-graphics --script command-line-greg.scm || die
+	"${S}"/src/coot-real --no-graphics --script python-tests/coot_unittest.py || die
+}
-- 
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