# ChangeLog for sci-libs/hdf5 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 # $Header: /var/cvsroot/gentoo-x86/sci-libs/hdf5/ChangeLog,v 1.88 2012/06/07 10:57:29 xarthisius Exp $ 07 Jun 2012; Kacper Kowalik <xarthisius@gentoo.org> hdf5-1.8.9-r1.ebuild: Add explicit rpath for prefix wrt #419677 by William Throwe <wtt6@cornell.edu> 06 Jun 2012; Kacper Kowalik <xarthisius@gentoo.org> +files/hdf5-1.8.9-static_libgfortran.patch, hdf5-1.8.9-r1.ebuild: Link libgfortran statically to H5test_kind in order to circumvent kind misdetection. Fixes #419895 by My Th <rei4dan@gmail.com> *hdf5-1.8.9-r1 (06 Jun 2012) 06 Jun 2012; Kacper Kowalik <xarthisius@gentoo.org> +hdf5-1.8.9-r1.ebuild, -hdf5-1.8.9.ebuild: Don't disable rpath for shared libraries wrt #419677 by William Throwe <wtt6@cornell.edu> *hdf5-1.8.9 (30 May 2012) 30 May 2012; Kacper Kowalik <xarthisius@gentoo.org> +files/hdf5-1.8.9-implicits.patch, +hdf5-1.8.9.ebuild: Version bump 30 May 2012; Jeff Horelick <jdhore@gentoo.org> hdf5-1.8.8-r1.ebuild: marked x86 per bug 417607 29 May 2012; Brent Baude <ranger@gentoo.org> hdf5-1.8.8-r1.ebuild: Marking hdf5-1.8.8-r1 ppc for bug 417607 29 May 2012; Brent Baude <ranger@gentoo.org> hdf5-1.8.8-r1.ebuild: Marking hdf5-1.8.8-r1 ppc64 for bug 417607 26 May 2012; Agostino Sarubbo <ago@gentoo.org> hdf5-1.8.8-r1.ebuild: Stable for amd64, wrt bug #417607 *hdf5-1.8.8-r1 (14 May 2012) 14 May 2012; Kacper Kowalik <xarthisius@gentoo.org> +hdf5-1.8.8-r1.ebuild, -hdf5-1.8.7.ebuild, -hdf5-1.8.8.ebuild: Install examples only if proper use flag is set. Fixes #409091 by Nikoli <nikoli@lavabit.com>. Drop old 05 Dec 2011; Kacper Kowalik <xarthisius@gentoo.org> hdf5-1.8.8.ebuild: Fix REQUIRED_USE being defined twice. Thanks to Arfrever 05 Dec 2011; Kacper Kowalik <xarthisius@gentoo.org> hdf5-1.8.8.ebuild: Use REQUIRED_USE instead of providing sane defaults wrt #392683 by Murph <MattFinn@gmail.com> 21 Nov 2011; Kacper Kowalik <xarthisius@gentoo.org> +files/hdf5-1.8.8-array_bounds.patch, +files/hdf5-1.8.8-implicits.patch, hdf5-1.8.8.ebuild: Fix implicits and array out of bounds *hdf5-1.8.8 (17 Nov 2011) 17 Nov 2011; Kacper Kowalik <xarthisius@gentoo.org> +files/hdf5-1.8.8-buildsystem.patch, +hdf5-1.8.8.ebuild, metadata.xml: Version bump wrt #390811 by Tolga Dalman, fixes bug #383843 by Cedric 23 Oct 2011; Tomáš Chvátal <scarabeus@gentoo.org> -hdf5-1.8.6.ebuild, hdf5-1.8.7.ebuild: Add static-libs switch, punt overshadowed version. 13 Jul 2011; Kacper Kowalik <xarthisius@gentoo.org> hdf5-1.8.7.ebuild: Add ~amd64-linux ~x86-linux 08 Jul 2011; Kacper Kowalik <xarthisius@gentoo.org> hdf5-1.8.7.ebuild: Export mpi wrappers again due to clash with fortran-2.eclass. Fixes bug 374431 by Ruggero Morsucci <mors_1tflops@yahoo.it> 06 Jul 2011; Kacper Kowalik <xarthisius@gentoo.org> hdf5-1.8.4-r1.ebuild, hdf5-1.8.6.ebuild, hdf5-1.8.7.ebuild: Fix use fortran check in pkg_setup 26 Jun 2011; Justin Lecher <jlec@gentoo.org> hdf5-1.8.4-r1.ebuild, hdf5-1.8.6.ebuild, hdf5-1.8.7.ebuild, metadata.xml: Bumped EAPI and corrected slots 22 Jun 2011; Justin Lecher <jlec@gentoo.org> hdf5-1.8.4-r1.ebuild, hdf5-1.8.6.ebuild, hdf5-1.8.7.ebuild: Conditionally check for fortran support, #372557 21 Jun 2011; Justin Lecher <jlec@gentoo.org> hdf5-1.8.4-r1.ebuild, hdf5-1.8.6.ebuild, hdf5-1.8.7.ebuild: Add dependency on virtual/fortran 21 Jun 2011; Justin Lecher <jlec@gentoo.org> hdf5-1.8.4-r1.ebuild, hdf5-1.8.6.ebuild, hdf5-1.8.7.ebuild: Added fortran-2.eclass support 08 Jun 2011; Jeroen Roovers <jer@gentoo.org> hdf5-1.8.4-r1.ebuild, hdf5-1.8.6.ebuild, hdf5-1.8.7.ebuild: Remove HPPA keywording. *hdf5-1.8.7 (13 May 2011) 13 May 2011; Kacper Kowalik <xarthisius@gentoo.org> -hdf5-1.8.5_p1-r1.ebuild, +hdf5-1.8.7.ebuild: Version bump. Exporting mpi wrappers is no longer necessary as hdf5 defaults to them if --enable-parallel is set. Drop old. *hdf5-1.8.6 (19 Feb 2011) 19 Feb 2011; Kacper Kowalik <xarthisius@gentoo.org> +hdf5-1.8.6.ebuild: Version bump *hdf5-1.8.5_p1-r1 (05 Nov 2010) 05 Nov 2010; Kacper Kowalik <xarthisius@gentoo.org> -hdf5-1.8.5_p1.ebuild, +hdf5-1.8.5_p1-r1.ebuild, +files/hdf5-1.8.5-implicits.patch: Fix implicits. *hdf5-1.8.5_p1 (05 Nov 2010) 05 Nov 2010; Kacper Kowalik <xarthisius@gentoo.org> -hdf5-1.8.5.ebuild, +hdf5-1.8.5_p1.ebuild: Version bump. Drop old. 09 Jul 2010; Kacper Kowalik <xarthisius@gentoo.org> -hdf5-1.6.4.ebuild, -files/hdf5-1.8.3-destdir.patch, -files/hdf5-1.8.3-gnutools.patch, -files/hdf5-1.8.3-signal.patch, metadata.xml: Remove ancient 09 Jul 2010; Samuli Suominen <ssuominen@gentoo.org> hdf5-1.8.4-r1.ebuild: ppc64 stable wrt #299710 03 Jul 2010; Kacper Kowalik <xarthisius@gentoo.org> hdf5-1.8.5.ebuild, metadata.xml: Adding debug flag 20 Jun 2010; Kacper Kowalik <xarthisius@gentoo.org> -files/hdf5-1.6.6-gcc4.3.patch, -hdf5-1.6.7.ebuild, -files/hdf5-gcc4.3.3-fix.patch, -hdf5-1.8.4_p1.ebuild, -files/hdf5-mpich2.patch, -hdf5-1.6.2.ebuild: Removing old ebuild and obsolete patches 20 Jun 2010; Raúl Porcel <armin76@gentoo.org> hdf5-1.8.4-r1.ebuild: alpha/ia64/sparc stable wrt #299710 17 Jun 2010; Justin Bronder <jsbronder@gentoo.org> hdf5-1.8.4-r1.ebuild: Remove dep on sys-cluster/lam-mpi, see #324415. *hdf5-1.8.5 (16 Jun 2010) 16 Jun 2010; Kacper Kowalik <xarthisius@gentoo.org> +hdf5-1.8.5.ebuild, +files/hdf5-1.8.5-noreturn.patch: Version bump. Fixes bug 324119 04 May 2010; Sébastien Fabbro <bicatali@gentoo.org> hdf5-1.8.4-r1.ebuild: Changed SRC_URI, per bug #317649 *hdf5-1.8.4_p1 (04 May 2010) 04 May 2010; Sébastien Fabbro <bicatali@gentoo.org> -hdf5-1.6.5-r1.ebuild, -hdf5-1.6.6.ebuild, -hdf5-1.8.3-r1.ebuild, files/hdf5-1.8.3-as-needed.patch, +hdf5-1.8.4_p1.ebuild: Version bump. Important update mainly for netcdf4 users 10 Feb 2010; Sébastien Fabbro <bicatali@gentoo.org> hdf5-1.8.4-r1.ebuild: Added some warnings for mpi 05 Feb 2010; Raúl Porcel <armin76@gentoo.org> hdf5-1.8.4-r1.ebuild, +files/hdf5-1.8.4-sigbus.patch: Add patch from debian for unaligned acceses, alpha/ia64/sparc stable wrt #299710 21 Jan 2010; Jeroen Roovers <jer@gentoo.org> hdf5-1.8.4-r1.ebuild: Stable for HPPA (bug #299710). 20 Jan 2010; Markus Meier <maekke@gentoo.org> hdf5-1.8.4-r1.ebuild: amd64 stable, bug #299710 19 Jan 2010; nixnut <nixnut@gentoo.org> hdf5-1.8.4-r1.ebuild: ppc stable #299710 15 Jan 2010; Christian Faulhammer <fauli@gentoo.org> hdf5-1.8.4-r1.ebuild: stable x86, bug 299710 11 Dec 2009; Sébastien Fabbro <bicatali@gentoo.org> files/hdf5-1.8.3-destdir.patch, hdf5-1.8.4-r1.ebuild: Removed destdir patch, now done with sed's. This also solves bug #286492 *hdf5-1.8.4-r1 (03 Dec 2009) 03 Dec 2009; Sébastien Fabbro <bicatali@gentoo.org> -hdf5-1.8.4.ebuild, +hdf5-1.8.4-r1.ebuild, +files/hdf5-1.8.4-gnutools.patch, +files/hdf5-1.8.4-scaleoffset.patch: Forced compilation -O0 on some buggy files, fixed some tests, re-introduced the fortran+mpi possibility, and keyworded ia64. Thanks Kacper Kowalik to do all this. 24 Nov 2009; Markus Dittrich <markusle@gentoo.org> hdf5-1.6.7.ebuild: Added a few improvements. *hdf5-1.8.4 (20 Nov 2009) 20 Nov 2009; Sébastien Fabbro <bicatali@gentoo.org> +hdf5-1.8.4.ebuild: Version bump. mpi and fortran do not compile together, so disable simultaneous mpi/fortran uses until patch 12 Oct 2009; Jeroen Roovers <jer@gentoo.org> hdf5-1.8.3-r1.ebuild: Stable for HPPA (bug #245707). 02 Oct 2009; Sébastien Fabbro <bicatali@gentoo.org> hdf5-1.8.3-r1.ebuild, files/hdf5-1.8.3-destdir.patch: Set CC=mpicc when building with mpi enabled (bug #286353), added --enabled-shared which was disabled with mpi enabled (bug #287124), and added slashes in destdir patch 01 Oct 2009; Tobias Klausmann <klausman@gentoo.org> hdf5-1.8.3-r1.ebuild: Keyworded on alpha, bug #285148 23 Sep 2009; Patrick Lauer <patrick@gentoo.org> hdf5-1.6.6.ebuild, hdf5-1.6.7.ebuild: Remove virtual/libc 17 Sep 2009; Sébastien Fabbro <bicatali@gentoo.org> hdf5-1.8.3-r1.ebuild: Removed the forced PIC configure line which was compiling static libraries with PIC *hdf5-1.8.3-r1 (15 Sep 2009) 15 Sep 2009; Steve Arnold <nerdboy@gentoo.org> -hdf5-1.8.3.ebuild, +hdf5-1.8.3-r1.ebuild: Updated to install the shared libs correctly. This allows other packages that link against hdf5 to actually build... 11 Sep 2009; Sébastien Fabbro <bicatali@gentoo.org> hdf5-1.8.3.ebuild, files/hdf5-1.8.3-as-needed.patch: More as-needed fixes, thanks to Kacper Kowalik closing bug #284518 24 Aug 2009; Sébastien Fabbro <bicatali@gentoo.org> hdf5-1.8.3.ebuild: Replaced use-based dependency for virtual by atom based ones. Thanks Mr_Bones. *hdf5-1.8.3 (18 Aug 2009) 18 Aug 2009; Sébastien Fabbro <bicatali@gentoo.org> +hdf5-1.8.3.ebuild, +files/hdf5-1.8.3-as-needed.patch, +files/hdf5-1.8.3-destdir.patch, +files/hdf5-1.8.3-gnutools.patch, +files/hdf5-1.8.3-includes.patch, +files/hdf5-1.8.3-noreturn.patch, +files/hdf5-1.8.3-signal.patch, metadata.xml: Version bump. Many fixes and cleanups, rewrote ebuild from scratch, merging from science overlay 04 Feb 2009; Patrick Lauer <patrick@gentoo.org> +files/hdf5-gcc4.3.3-fix.patch, hdf5-1.6.7.ebuild: fortify_sources fix, patch from Simon C. Ion, closes #257177 23 Jan 2009; Steve Arnold <nerdboy@gentoo.org> hdf5-1.6.7.ebuild: Updated for upstream changes in test-tools and a more appropriate sed invocation. *hdf5-1.6.7 (17 Aug 2008) 17 Aug 2008; Markus Dittrich <markusle@gentoo.org> -hdf5-1.6.5.ebuild, +hdf5-1.6.7.ebuild: Version bump and replaced "which" with "type -p". Removed obsolete ebuild. 07 Aug 2008; Ulrich Mueller <ulm@gentoo.org> metadata.xml: Add USE flag description to metadata wrt GLEP 56. 22 Jun 2008; Markus Dittrich <markusle@gentoo.org> +files/hdf5-1.6.6-gcc4.3.patch, hdf5-1.6.6.ebuild: Added patch to allow compilation with gcc-4.3 (fixes bug #228341). Thanks much to Pinky <master_up@post.cz> for his patch. 13 Jun 2008; Markus Dittrich <markusle@gentoo.org> hdf5-1.6.6.ebuild: Removed sparc specific mask of mpi in DEPEND in favor of package.use.mask (see bug #217854). 06 Jun 2008; Markus Dittrich <markusle@gentoo.org> hdf5-1.6.5-r1.ebuild, hdf5-1.6.6.ebuild: Removed quotes around myconf since they break configure (see bug #225021). Thanks much to Nuno Sucena Almeida <slug@aeminium.org> for pointing this out. 04 Jun 2008; Steve Arnold <nerdboy@gentoo.org> hdf5-1.6.6.ebuild: Adding ~hppa back in (doh! needed a full tree updated) 04 Jun 2008; Steve Arnold <nerdboy@gentoo.org> hdf5-1.6.6.ebuild: Fixed some build and test script issues, and updated the test function so the MPI tests work on a single CPU box. 15 Apr 2008; Markus Dittrich <markusle@gentoo.org> hdf5-1.6.6.ebuild: Fixed messed up symlinks for libh5test.so (see bug #217720). Also re-added spark KEYWORD without mpi support for now. 09 Apr 2008; Jeroen Roovers <jer@gentoo.org> hdf5-1.6.6.ebuild: Marked ~hppa (bug #216855). 04 Feb 2008; Steve Arnold <nerdboy@gentoo.org> hdf5-1.6.6.ebuild: fixed QA issues and added additional tools via use flag 06 Dec 2007; Markus Dittrich <markusle@gentoo.org> hdf5-1.6.6.ebuild: Fixed misplaced quotation mark (fixes bug #201479). 05 Dec 2007; Markus Dittrich <markusle@gentoo.org> hdf5-1.6.6.ebuild: Removed quotes around myconf since they confuse configure (fixes bug #201205). *hdf5-1.6.6 (03 Dec 2007) 03 Dec 2007; Steve Arnold <nerdboy@gentoo.org> +files/hdf5-mpich2.patch, +hdf5-1.6.6.ebuild: Updated to latest upstream release, with mpi fixes, however, this version is locked to mpich2-1.0.6 due to pvfs2, however, sparc is dropped until the parallel I/O thing is worked out with other MPI libs. Tests work, including mpi (but needs testing in a real cluster). 01 Nov 2006; Donnie Berkholz <dberkholz@gentoo.org>; ChangeLog: Update for my nick change spyderous -> dberkholz. 13 Jul 2006; Steve Arnold <nerdboy@gentoo.org> hdf5-1.6.5-r1.ebuild: removed pgi fortran detection 08 Jul 2006; Markus Rothe <corsair@gentoo.org> hdf5-1.6.4.ebuild: Stable on ppc64 28 Jun 2006; Steve Arnold <nerdboy@gentoo.org> hdf5-1.6.5-r1.ebuild: Reverted to original (and standard) library location; even though it was much tidier, it was causing linkage issues... *hdf5-1.6.5-r1 (24 Jun 2006) 24 Jun 2006; Steve Arnold <nerdboy@gentoo.org> +files/mpd.conf, hdf5-1.6.5.ebuild, +hdf5-1.6.5-r1.ebuild: Updated for bug 134439, fortran support, tests, and creeping complexity. Added use flags and logic for incompatible configure options, and support for additional Fortran compilers (currently only tested with gfortran). See comments and einfo for more details. Backport install fixes. Also made SHLIB change for issue below (bug #118777). 14 Jun 2006; Ferris McCormick <fmccor@gentoo.org> hdf5-1.6.5.ebuild: Add ~sparc keyword, closing Bug #118777 --- but please see Comments 4 and 5 on the bug for conditions under which hdf5 should be built. (USE flags and environment variables curiosities.) *hdf5-1.6.5 (25 May 2006) 25 May 2006; Steve Arnold <nerdboy@gentoo.org> hdf5-1.6.4.ebuild, +hdf5-1.6.5.ebuild: Early stable bump for gdal (required), plus new testing version (since the only real issue besides the sparc bug was the mpi thing). To do: 1) resolve virtual/mpi issues for ppc64 and others 2) need fix for buss error on sparc 3) get szip support working for other arches 21 May 2006; Steve Arnold <nerdboy@gentoo.org> hdf5-1.6.2.ebuild, hdf5-1.6.4.ebuild: Updated to fix a few minor odds and ends (extra configure options, get_libdir, etc). Verified working with mpich2-1.0.3 (bug #107161). Need to stablize for gdal; also needs some work on other arches (eg, the sparc bug #118777). Go back to virtual/mpi when deps are fixed (mpich is dorked). 17 Mar 2006; Markus Rothe <corsair@gentoo.org> hdf5-1.6.4.ebuild: Added ~ppc64; bug #126527 14 Feb 2006; Donnie Berkholz <dberkholz@gentoo.org>; hdf5-1.6.4.ebuild: Use virtual/mpi instead of an || for lam-mpi and mpich. It caused issues with octave, reported by humpback@gentoo.org. 16 Dec 2005; Diego Pettenò <flameeyes@gentoo.org> hdf5-1.6.4.ebuild: Remove --with-gnu-ld option, bug #108386. 11 Sep 2005; Steve Arnold <nerdboy@gentoo.org> hdf5-1.6.2.ebuild: stable bump for sparc 18 Apr 2005; Joseph Jezak <josejx@gentoo.org> hdf5-1.6.2.ebuild: Marked ppc stable. *hdf5-1.6.4 (17 Apr 2005) 17 Apr 2005; Olivier Fisette <ribosome@gentoo.org> -hdf5-1.4.5.ebuild, -hdf5-1.6.0.ebuild, -hdf5-1.6.1.ebuild, +hdf5-1.6.4.ebuild: Removed obsolete versions. *hdf5-1.6.4 (17 Apr 2005) 17 Apr 2005; Olivier Fisette <ribosome@gentoo.org> +hdf5-1.6.4.ebuild: New version. Added MPI support. 01 Apr 2005; Aron Griffis <agriffis@gentoo.org> hdf5-1.6.2.ebuild: stable on ia64 29 Dec 2004; Ciaran McCreesh <ciaranm@gentoo.org> : Change encoding to UTF-8 for GLEP 31 compliance *hdf5-1.6.2 (28 Dec 2004) 28 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml, +hdf5-1.4.5.ebuild, +hdf5-1.6.0.ebuild, +hdf5-1.6.1.ebuild, +hdf5-1.6.2.ebuild: Moved from dev-libs/hdf5 to sci-libs/hdf5. 25 Jun 2004; Danny van Dyk <kugelfang@gentoo.org> hdf5-1.6.2.ebuild: Marked stable on amd64. 15 Jun 2004; Michael Sterrett <mr_bones_@gentoo.org> hdf5-1.4.5.ebuild, hdf5-1.6.0.ebuild, hdf5-1.6.1.ebuild, hdf5-1.6.2.ebuild: PROVIDE is for virtuals 05 May 2004; Bryan Østergaard <kloeri@gentoo.org> hdf5-1.6.2.ebuild: Stable on alpha. 03 Apr 2004; Peter Bienstman <pbienst@gentoo.org> hdf5-1.6.2.ebuild: Marked stable on x86. *hdf5-1.6.2 (03 Mar 2004) 3 Mar 2004; <pbienst@gentoo.org> hdf5-1.6.2.ebuild: New version. 3 Mar 2004; <pbienst@gentoo.org> hdf5-1.6.1.ebuild: Mark stable on x86. 18 Feb 2004; <augustus@gentoo.org> hdf5-1.6.1.ebuild: Added ~amd64 to keywords. 16 Feb 2004; Aron Griffis <agriffis@gentoo.org> hdf5-1.6.1.ebuild: add ~alpha and ~ia64 15 Feb 2004; Jason Wever <weeve@gentoo.org> hdf5-1.6.1.ebuild: Added ~sparc keyword to fix broken dependencies of app-sci/octave. *hdf5-1.6.1 (06 jan 2004) 06 Jan 2004; George Shapovalov <george@gentoo.org> hdf5-1.6.1.ebuild : new version (#35792) thanks to Peter Bienstman <Peter.Bienstman@rug.ac.be> for notification *hdf5-1.6.0 (24 Aug 2003) 24 Aug 2003; George Shapovalov <george@gentoo.org> hdf5-1.6.0.ebuild : added few chenges from #21071, added ssl to IUSE thanks to Donald Giuliano <guido@ou.edu> for some configure flags suggestions 24 Aug 2003; George Shapovalov <george@gentoo.org> hdf5-1.6.0.ebuild : new version (#25365), this one installs examples, and of course in a wrong place :), had to fix location. thanks to James Cloos <cloos@jhcloos.com> for notification *hdf5-1.4.5 (19 Jun 2003) 19 Jun 2003; George Shapovalov <george@gentoo.org> hdf5-1.4.5.ebuild, Manifest, files/{digest-hdf5-1.4.5} : initial release (#21071) HDF5 is a general purpose library and file format for storing scientific data. ebuild submitted by Castel?o <castelao@oceanologia.net> and Shaun Cloherty <s.cloherty@gsbme.unsw.edu.au>