# Copyright 1999-2008 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-libs/hdf5/hdf5-1.6.6.ebuild,v 1.4 2008/02/04 07:58:32 nerdboy Exp $ inherit eutils fixheadtails flag-o-matic fortran toolchain-funcs DESCRIPTION="General purpose library and file format for storing scientific data" HOMEPAGE="http://hdf.ncsa.uiuc.edu/HDF5/" SRC_URI="ftp://ftp.hdfgroup.org/HDF5/current/src/${P}.tar.gz" LICENSE="NCSA-HDF" SLOT="0" KEYWORDS="~amd64 ~ppc ~ppc64 ~x86" # need to update szip to get alpha, ia64, etc back in here, IUSE="cxx debug fortran mpi ssl szip threads tools zlib " DEPEND="mpi? ( >=sys-cluster/mpich2-1.0.6 net-fs/nfs-utils ) ssl? ( dev-libs/openssl ) szip? ( sci-libs/szip ) zlib? ( sys-libs/zlib ) threads? ( virtual/libc ) sys-devel/gcc sys-apps/coreutils sys-apps/which sys-process/time" RDEPEND="${DEPEND} dev-lang/perl" pkg_setup() { # The above gcc dep is a hack to insure at least one Fortran 90 # compiler is installed if the user enables fortran support. Feel # free to improve it... if use fortran ; then fortran_pkg_setup case "${FORTRANC}" in gfortran|ifc|ifort|f95) export F9X="${FORTRANC}" ;; g77|f77|f2c) export F9X="" ;; esac fi # if anyone knows of a better way to do this... if use mpi && ! built_with_use sys-cluster/mpich2 pvfs2 ; then ewarn "Your MPI library needs parallel IO support for HDF5. You" ewarn "must re-emerge mpich2 with USE=pvfs2." die "requires parallel IO support" fi } src_unpack() { unpack ${A} cd "${S}" if use mpi; then # this is required for mpich2, and should be safe otherwise epatch "${FILESDIR}/${PN}-mpich2.patch" || die "mpich2 patch failed" fi ht_fix_file "${S}"/bin/release "${S}"/tools/h5dump/testh5dump.sh.in } src_compile() { local myconf # a better way to do this would also be nice, but i can't think of one if use cxx && ! use mpi ; then myconf="${myconf} --enable-cxx" elif use cxx && use mpi ; then ewarn "C++ support is not compatible with the mpi interface." die "Please disable either cxx or mpi." else myconf="${myconf} --disable-cxx" fi if use fortran && use mpi ; then ewarn "Requires Fortran 90 support in your mpi library..." myconf="${myconf} --enable-fortran --enable-parallel" fi use threads && myconf="${myconf} --with-pthread --enable-threadsafe" if use debug ; then myconf="${myconf} --enable-debug=all" else myconf="${myconf} --enable-production" fi # NOTE: the hdf5 configure script has its own interpretation of # the ARCH environment variable which conflicts with that of # ebuild/emerge. As a work around, we save the ARCH variable as # EBUILD_ARCH and restore it when we are done. EBUILD_ARCH="${ARCH}" unset ARCH if use mpi ; then export NPROCS=1 export CC="mpicc" if built_with_use sys-cluster/mpich2 fortran ; then export F9X="mpif90" fi if built_with_use sys-cluster/mpich2 pvfs2 ; then export LIBS="$(sh pvfs2-config --libs) -lmpich" else export LIBS="-lmpich" fi # if built_with_use sys-cluster/mpich2 mpe ; then # myconf="${myconf} --with-mpe=/usr/include,/usr/$(get_libdir)" # fi append-ldflags "${LIBS}" fi econf --prefix=/usr \ $(use_enable zlib) \ $(use_with ssl) \ --enable-linux-lfs \ --sysconfdir=/etc \ --infodir=/usr/share/info \ --libdir=/usr/$(get_libdir) \ --mandir=/usr/share/man \ --enable-shared --with-pic \ "${myconf}" || die "configure failed" # restore the ARCH environment variable ARCH="${EBUILD_ARCH}" # emake has occasional segfaults make || die "make failed" } src_test() { # make test is not reliable, and the mpi tests have a weird failure export HDF5_Make_Ignore=yes if use mpi ; then export HDF5_PARAPREFIX="${S}/testpar" export CC="/usr/bin/mpicc" install -g portage -o portage -m 0600 "${FILESDIR}"/mpd.conf "${HOME}"/.mpd.conf /usr/bin/mpd --daemon fi make check || die "make test failed" use mpi && /usr/bin/mpdallexit export HDF5_Make_Ignore=no } src_install() { # emake install and einstall cause sandbox violations here make \ prefix="${D}"usr \ mandir="${D}"usr/share/man \ docdir="${D}"usr/share/doc/"${PF}" \ libdir="${D}"usr/$(get_libdir) \ infodir="${D}usr"/share/info \ install || die "make install failed" if use tools ; then dolib.a "${S}"/tools/lib/.libs/libh5tools.a \ "${S}"/test/.libs/libh5test.a || die "dolib.a failed" insinto /usr/$(get_libdir) doins "${S}"/tools/lib/libh5tools.la \ "${S}"/test/libh5test.la || die "doins failed" dolib.so "${S}"/test/.libs/libh5test.so.0.0.0 \ || die "dolib.so failed" doins "${S}"/test/.libs/libh5test.so.0 \ "${S}"/test/.libs/libh5test.so || die "doins failed" exeinto /usr/bin newexe "${S}"/bin/iostats iostats.pl || die "newexe failed" exeinto /usr/share/"${PN}/test-tools" cd "${S}"/test doexe big bittests fillval lheap file_handle istore set_extent \ srb_append cache flush1 srb_read cmpd_dset flush2 srb_write \ dangle gass_append links stab dsets dtypes enum extend external \ gass_read mount gass_write getname gheap hyperslab mtime ntypes \ ohdr reserved stream_test testhdf5 ttsafe unlink cd "${S}" use mpi && doexe testpar/testphdf5 testpar/t_mpi fi dodoc README.txt MANIFEST dohtml doc/html/* if use mpi ; then mv "${D}"usr/bin/h5pcc "${D}"usr/bin/h5cc fi if use fortran ; then mv "${D}"usr/bin/h5pfc "${D}"usr/bin/h5fc fi # change the SHLIB default for C dosed "s/SHLIB:-no/SHLIB:-yes/g" "${D}"usr/bin/h5cc || die "dosed failed" } pkg_postinst() { elog elog "There are currently 2 non-fatal test errors in the mpi tests," elog "however, all C++, Fortran, and other tests pass successfully." elog "The only expected failure is currently in the PHDF5 section" elog "under MPI functionality tests. The second section using the" elog "MPIPOSIX driver should work, along with all other tests." elog elog "Suggested USE flags for fortran and mpi support using gfortran:" elog "USE=\"fortran mpi -cxx\"" elog ewarn "Note 1: currently testing pvfs2 support (with mpi). Please" ewarn "report any problems in the usual way." elog ewarn "Note 2: you'll need rawio support enabled in your kernel or" ewarn "certain asynchronous IO operations will fail. Either enable" ewarn "the RAW driver (under Character Devices) or patch your kernel" ewarn "with the new PAIO drivers and use libposix-aio. See both:" ewarn "http://sourceforge.net/projects/paiol and" ewarn "http://www.bullopensource.org/posix for more info." elog }