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# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/mauvealigner/mauvealigner-9999.ebuild,v 1.1 2009/04/17 18:03:19 weaver Exp $
EAPI=5
AUTOTOOLS_AUTORECONF=true
PYTHON_COMPAT=( python{2_6,2_7} )
inherit autotools-utils distutils-r1 subversion
DESCRIPTION="General Hidden Markov Model library - efficient data structures and algorithms for HMMs"
HOMEPAGE="http://ghmm.sourceforge.net/"
SRC_URI=""
ESVN_REPO_URI="https://ghmm.svn.sourceforge.net/svnroot/ghmm/trunk/ghmm"
LICENSE="LGPL-2.1"
SLOT="0"
KEYWORDS=""
IUSE="gsl lapack +python static-libs"
RDEPEND="
dev-libs/libxml2
gsl? ( sci-libs/gsl )
lapack? (
sci-libs/clapack
virtual/lapack
)"
DEPEND="${RDEPEND}"
S="${WORKDIR}/${PN}"
ESVN_BOOTSTRAP="autotools-utils_src_prepare"
PATCHES=(
"${FILESDIR}"/${P}-out-of-source.patch
"${FILESDIR}"/${P}-link.patch
"${FILESDIR}"/${P}-respect.patch
"${FILESDIR}"/${P}-obsolete.patch
)
src_prepare() {
use python && AUTOTOOLS_IN_SOURCE_BUILD=1
autotools-utils_src_prepare
use python && cd "${S}"/ghmmwrapper && distutils-r1_python_prepare
}
src_configure() {
local myeconfargs=(
--without-python
--disable-obsolete
$(use_enable gsl)
$(use_enable lapack atlas)
)
autotools-utils_src_configure
}
src_compile() {
autotools-utils_src_compile
use python && cd "${S}"/ghmmwrapper && distutils-r1_src_compile
}
src_install() {
autotools-utils_src_install
use python && cd "${S}"/ghmmwrapper && distutils-r1_src_install
}
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