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* sci-biology/rebase: Bump to latest releaseJustin Lecher2018-06-092-0/+46
| | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> Package-Manager: Portage-2.3.40, Repoman-2.3.9
* sci-biology/aaindex: use HTTPsMichael Mair-Keimberger2018-06-091-2/+2
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* sci-biology/bamtools: Use ninja for buildingDavid Seifert2018-06-022-2/+4
| | | | Package-Manager: Portage-2.3.40, Repoman-2.3.9
* sci-biology/biopython: Bump to 1.71David Seifert2018-05-272-0/+58
| | | | | Closes: https://bugs.gentoo.org/653006 Package-Manager: Portage-2.3.40, Repoman-2.3.9
* sci-biology/phylip: Update dependencies (x11-proto/* -> x11-base/xorg-proto).Arfrever Frehtes Taifersar Arahesis2018-05-213-5/+5
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* sci-biology/wgs-assembler: remove oldMichael Mair-Keimberger2018-05-211-67/+0
| | | | Closes: https://github.com/gentoo/gentoo/pull/8512
* sci-biology/glimmer: use HTTPsMichael Mair-Keimberger2018-05-212-5/+5
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* sci-biology/velvet: use HTTPsMichael Mair-Keimberger2018-05-212-6/+6
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* sci-biology/mafft: use HTTPsMichael Mair-Keimberger2018-05-213-9/+9
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* sci-biology/mothur: use HTTPsMichael Mair-Keimberger2018-05-211-3/+3
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* sci-biology/prosite: use HTTPsMichael Mair-Keimberger2018-05-211-2/+2
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* sci-biology/ncbi-tools: use HTTPsMichael Mair-Keimberger2018-05-211-2/+2
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* sci-biology/fasta: use HTTPsMichael Mair-Keimberger2018-05-211-2/+2
| | | | Closes: https://github.com/gentoo/gentoo/pull/8513
* sci-biology/seqan: inherit versionatorAndreas Sturmlechner2018-05-191-2/+2
| | | | Package-Manager: Portage-2.3.38, Repoman-2.3.9
* sci-biology/seqan: inherit versionatorAndreas Sturmlechner2018-05-181-2/+2
| | | | Package-Manager: Portage-2.3.38, Repoman-2.3.9
* sci-biology/biopandas: Drop oldAndreas Sturmlechner2018-05-162-43/+0
| | | | Package-Manager: Portage-2.3.36, Repoman-2.3.9
* sci-biology/wgs-assembler: amd64 stable wrt bug #374815Agostino Sarubbo2018-05-081-1/+1
| | | | | Package-Manager: Portage-2.3.24, Repoman-2.3.6 RepoMan-Options: --include-arches="amd64"
* sci-biology/wgs-assembler: x86 stable (bug #374815)Thomas Deutschmann2018-05-071-1/+1
| | | | Package-Manager: Portage-2.3.34, Repoman-2.3.9
* sci-biology/bioruby: add ruby24Hans de Graaff2018-05-061-1/+1
| | | | Package-Manager: Portage-2.3.24, Repoman-2.3.6
* sci-biology/wgs-assembler: Revision bump using libtirpc, bug 374815Andreas K. Hüttel2018-04-292-0/+88
| | | | | Bug: https://bugs.gentoo.org/374815 Package-Manager: Portage-2.3.31, Repoman-2.3.9
* update pypi HOMEPAGE to avoid redirectionMichael Mair-Keimberger2018-04-263-3/+3
| | | | Closes: https://github.com/gentoo/gentoo/pull/8080
* Retirement: ercpe@gentoo.org bug #475224Amy Liffey2018-04-261-4/+0
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* sci-biology/foldingathome: fix systemd unitIan Stakenvicius2018-04-251-5/+5
| | | | | | | | | This isn't a perfect fix since if the EPREFIX path contains characters that need to be quoted the paths will still fail, however when compared to a systemd unit that doesn't work at all this is significantly better than nothing. Bug: http://bugs.gentoo.org/645200 Package-Manager: Portage-2.3.19, Repoman-2.3.6
* Replace pypi.python.org with pypi.org in HOMEPAGEMike Gilbert2018-04-194-4/+4
| | | | Bug: https://bugs.gentoo.org/653540
* sci-biology/bioruby: remove unused patchMichael Mair-Keimberger2018-04-181-29/+0
| | | | Closes: https://github.com/gentoo/gentoo/pull/8034
* sci-biology/beast-mcmc: remove last rited packageMikle Kolyada2018-04-154-177/+0
| | | | Closes: https://bugs.gentoo.org/514432
* sci-biology/bioruby: remove broken ruby22-only version, bug 645612Hans de Graaff2018-04-142-38/+0
| | | | Package-Manager: Portage-2.3.24, Repoman-2.3.6
* sci-biology/bioruby: stable on amd64 and x86, bug 628636Hans de Graaff2018-04-141-3/+3
| | | | Package-Manager: Portage-2.3.24, Repoman-2.3.6
* sci-biology/qrna: Drop oldAndreas Sturmlechner2018-04-061-58/+0
| | | | Package-Manager: Portage-2.3.28, Repoman-2.3.9
* sci-biology/qrna: DEPEND on sci-biology/hmmer:2Martin Mokrejš2018-04-061-0/+58
| | | | Closes: https://github.com/gentoo/gentoo/pull/7134
* sci-biology/clustalx: Drop Qt4-basedAndreas Sturmlechner2018-03-182-92/+0
| | | | Package-Manager: Portage-2.3.24, Repoman-2.3.6
* sci-biology/clustalx: x86 stable (bug #644726)Thomas Deutschmann2018-03-181-1/+1
| | | | Package-Manager: Portage-2.3.24, Repoman-2.3.6
* sci-biology/clustalx: amd64 stable wrt bug #644726Mikle Kolyada2018-03-171-1/+1
| | | | Package-Manager: Portage-2.3.24, Repoman-2.3.6
* sci-biology/abyss: bump up to 2.0.3Sergei Trofimovich2018-03-152-0/+55
| | | | Package-Manager: Portage-2.3.24, Repoman-2.3.6
* sci-biology/rebase: Bump to latest releaseJustin Lecher2018-03-112-0/+46
| | | | | Package-Manager: Portage-2.3.20, Repoman-2.3.6 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/clustalx: Switch to Qt5Andreas Sturmlechner2018-03-042-0/+351
| | | | | | | Thanks to Debian. Bug: https://bugs.gentoo.org/644726 Package-Manager: Portage-2.3.24, Repoman-2.3.6
* sci-biology/amos: Drop oldAndreas Sturmlechner2018-03-031-53/+0
| | | | | Closes: https://bugs.gentoo.org/645140 Package-Manager: Portage-2.3.24, Repoman-2.3.6
* sci-biology/amos: Drop USE=qt4Andreas Sturmlechner2018-03-031-0/+52
| | | | | Bug: https://bugs.gentoo.org/645140 Package-Manager: Portage-2.3.24, Repoman-2.3.6
* sci-biology/phylip: block against dev-lang/elixir, bug #537514Sergei Trofimovich2018-02-151-0/+55
| | | | | | Reported-by: Toralf Förster Bug: https://bugs.gentoo.org/537514 Package-Manager: Portage-2.3.24, Repoman-2.3.6
* sci-biology/seqan: Add live ebuildDavid Seifert2018-02-111-0/+90
| | | | Package-Manager: Portage-2.3.24, Repoman-2.3.6
* sci-biology/seqan: Version bump to 2.4.0David Seifert2018-02-114-4/+112
| | | | | | | * Add USE=tools option to install command-line tools Closes: https://bugs.gentoo.org/618278 Package-Manager: Portage-2.3.24, Repoman-2.3.6
* sci-biology/amos: Add missing USE=qt4 build switchAndreas Sturmlechner2018-01-151-2/+7
| | | | Package-Manager: Portage-2.3.19, Repoman-2.3.6
* sci-biology/phred: RehashDavid Seifert2018-01-141-1/+1
| | | | | Closes: https://bugs.gentoo.org/642906 Package-Manager: Portage-2.3.19, Repoman-2.3.6
* sci-biology/phrap: RehashDavid Seifert2018-01-141-1/+1
| | | | Package-Manager: Portage-2.3.19, Repoman-2.3.6
* sci-biology/consed: RehashDavid Seifert2018-01-141-2/+2
| | | | Package-Manager: Portage-2.3.19, Repoman-2.3.6
* sci-biology/repeatmasker-libraries: Update Manifest hashes.Ulrich Müller2018-01-131-1/+1
| | | | Bug: https://bugs.gentoo.org/642906
* sci-biology/fastx_toolkit: Initial additionDavid Seifert2018-01-105-0/+119
| | | | Package-Manager: Portage-2.3.19, Repoman-2.3.6
* sci-biology/libgtextutils: Initial additionDavid Seifert2018-01-105-0/+132
| | | | | Closes: https://bugs.gentoo.org/486380 Package-Manager: Portage-2.3.19, Repoman-2.3.6
* sci-biology/bcftools: Update contact for mmokrejsMichał Górny2018-01-061-1/+1
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* sci-biology/STAR: Update contact for mmokrejsMichał Górny2018-01-061-1/+1
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