From 6fcc8510a6610468329a8eafe307273e523f8719 Mon Sep 17 00:00:00 2001
From: David Seifert <soap@gentoo.org>
Date: Sun, 17 Jan 2016 11:51:29 +0100
Subject: sci-biology/vaal: Place blockers on sci-biology/allpaths{,lg}

Gentoo-Bug: 572128

Package-Manager: portage-2.2.26
---
 sci-biology/vaal/vaal-46233-r1.ebuild | 42 ------------------------------
 sci-biology/vaal/vaal-46233-r2.ebuild | 48 +++++++++++++++++++++++++++++++++++
 2 files changed, 48 insertions(+), 42 deletions(-)
 delete mode 100644 sci-biology/vaal/vaal-46233-r1.ebuild
 create mode 100644 sci-biology/vaal/vaal-46233-r2.ebuild

(limited to 'sci-biology')

diff --git a/sci-biology/vaal/vaal-46233-r1.ebuild b/sci-biology/vaal/vaal-46233-r1.ebuild
deleted file mode 100644
index 20b3bf0de466..000000000000
--- a/sci-biology/vaal/vaal-46233-r1.ebuild
+++ /dev/null
@@ -1,42 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=6
-
-inherit autotools
-
-DESCRIPTION="Algorithm for detecting SNPs, indels, and other polymorphisms"
-HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd/"
-SRC_URI="
-	ftp://ftp.broad.mit.edu/pub/crd/VAAL/latest_source_code/${P}.tar.gz
-	ftp://ftp.broad.mit.edu/pub/crd/VAAL/VAAL_manual.doc"
-
-LICENSE="Whitehead-MIT"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE="openmp"
-
-DEPEND=">=dev-libs/boost-1.41.0-r3"
-RDEPEND="${DEPEND}"
-
-DOCS=( "${DISTDIR}/VAAL_manual.doc" )
-PATCHES=( "${FILESDIR}/${P}_remove-namespace-std.patch" )
-
-src_prepare() {
-	sed \
-		-e '/COPYING/d' \
-		-i src/Makefile.am || die
-
-	sed \
-		-e 's:-ggdb::g' \
-		-e '/AC_OPENMP_CEHCK/d' \
-		-i configure.ac || die
-	default
-	eautoreconf
-}
-
-src_configure() {
-	econf \
-		$(use_enable openmp)
-}
diff --git a/sci-biology/vaal/vaal-46233-r2.ebuild b/sci-biology/vaal/vaal-46233-r2.ebuild
new file mode 100644
index 000000000000..cb10e8e684c7
--- /dev/null
+++ b/sci-biology/vaal/vaal-46233-r2.ebuild
@@ -0,0 +1,48 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+inherit autotools
+
+DESCRIPTION="Algorithm for detecting SNPs, indels, and other polymorphisms"
+HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd/"
+SRC_URI="
+	ftp://ftp.broad.mit.edu/pub/crd/VAAL/latest_source_code/${P}.tar.gz
+	ftp://ftp.broad.mit.edu/pub/crd/VAAL/VAAL_manual.doc"
+
+LICENSE="Whitehead-MIT"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="openmp"
+
+RDEPEND="
+	!sci-biology/allpaths
+	!sci-biology/allpathslg"
+DEPEND="
+	${RDEPEND}
+	dev-libs/boost"
+
+DOCS=( "${DISTDIR}/VAAL_manual.doc" )
+PATCHES=(
+	"${FILESDIR}/${P}_remove-namespace-std.patch"
+)
+
+src_prepare() {
+	sed \
+		-e '/COPYING/d' \
+		-i src/Makefile.am || die
+
+	sed \
+		-e 's:-ggdb::g' \
+		-e '/AC_OPENMP_CEHCK/d' \
+		-i configure.ac || die
+	default
+	eautoreconf
+}
+
+src_configure() {
+	econf \
+		$(use_enable openmp)
+}
-- 
cgit v1.2.3-65-gdbad