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author | 2009-04-13 00:58:50 +0000 | |
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committer | 2009-04-13 00:58:50 +0000 | |
commit | 3212442d1fe3146e422c752bca200986703a017a (patch) | |
tree | 676329dba7ac9671881ea785610696155eb3f9bd /sci-biology/mpiblast/files | |
parent | Fix the has_version check. Current eclass does not support cmake 2.4... (diff) | |
download | historical-3212442d1fe3146e422c752bca200986703a017a.tar.gz historical-3212442d1fe3146e422c752bca200986703a017a.tar.bz2 historical-3212442d1fe3146e422c752bca200986703a017a.zip |
Import from Science overlay
Package-Manager: portage-2.2_rc20/cvs/Linux 2.6.26-gentoo-r4 x86_64
Diffstat (limited to 'sci-biology/mpiblast/files')
-rw-r--r-- | sci-biology/mpiblast/files/mpiblast-1.5.0-fix-build.patch | 48 |
1 files changed, 48 insertions, 0 deletions
diff --git a/sci-biology/mpiblast/files/mpiblast-1.5.0-fix-build.patch b/sci-biology/mpiblast/files/mpiblast-1.5.0-fix-build.patch new file mode 100644 index 000000000000..93aa68309777 --- /dev/null +++ b/sci-biology/mpiblast/files/mpiblast-1.5.0-fix-build.patch @@ -0,0 +1,48 @@ +diff -u mpiblast-1.5.0-pio{_c,}/ncbi/make/makedis.csh +--- mpiblast-1.5.0-pio_c/ncbi/make/makedis.csh 2006-09-14 11:37:03.000000000 -0400 ++++ mpiblast-1.5.0-pio/ncbi/make/makedis.csh 2009-04-02 17:01:08.411742006 -0400 +@@ -419,9 +419,11 @@ + CFLAGS1=\"$NCBI_OPTFLAG $NCBI_CFLAGS1 $OGL_INCLUDE $PNG_INCLUDE\" \ + LDFLAGS1=\"$NCBI_LDFLAGS1\" OTHERLIBS=\"$NCBI_OTHERLIBS\" \ + SHELL=\"$NCBI_MAKE_SHELL\" LCL=\"$NCBI_DEFAULT_LCL\" \ +- RAN=\"$NCBI_RANLIB\" AR=\"$NCBI_AR\" CC=\"$NCBI_CC\" $ALL_VIB all' +-eval echo $CMD +-eval echo $CMD | sh ++ RAN=\"$NCBI_RANLIB\" AR=\"$NCBI_AR\" CC=\"$NCBI_CC\" $ALL_VIB ' ++eval echo $CMD copy ++eval echo $CMD copy | sh ++eval echo $CMD all ++eval echo $CMD all | sh + + set make_stat = $status + +@@ -473,14 +475,28 @@ + THREAD_OBJ=$NCBI_THREAD_OBJ \ + THREAD_OTHERLIBS=\"$NCBI_MT_OTHERLIBS\" \ + NETENTREZVERSION=\"$NETENTREZVERSION\" $NET_VIB' ++ set CPY='make $MFLG -f makenet.unx \ ++ CFLAGS1=\"$NCBI_OPTFLAG $NCBI_CFLAGS1 $OGL_INCLUDE\" \ ++ LDFLAGS1=\"$NCBI_LDFLAGS1\" SHELL=\"$NCBI_MAKE_SHELL\" \ ++ AR=\"$NCBI_AR\" CC=\"$NCBI_CC\" RAN=\"$NCBI_RANLIB\" OTHERLIBS=\"$NCBI_OTHERLIBS\" \ ++ THREAD_OBJ=$NCBI_THREAD_OBJ \ ++ THREAD_OTHERLIBS=\"$NCBI_MT_OTHERLIBS\" \ ++ NETENTREZVERSION=\"$NETENTREZVERSION\" copy' + else + set CMD='make $MFLG -f makenet.unx \ + CFLAGS1=\"$NCBI_OPTFLAG $NCBI_CFLAGS1 $OGL_INCLUDE\" \ + LDFLAGS1=\"$NCBI_LDFLAGS1\" SHELL=\"$NCBI_MAKE_SHELL\" \ + AR=\"$NCBI_AR\" CC=\"$NCBI_CC\" RAN=\"$NCBI_RANLIB\" OTHERLIBS=\"$NCBI_OTHERLIBS\" \ + NETENTREZVERSION=\"$NETENTREZVERSION\" $NET_VIB' ++ set CPY='make $MFLG -f makenet.unx \ ++ CFLAGS1=\"$NCBI_OPTFLAG $NCBI_CFLAGS1 $OGL_INCLUDE\" \ ++ LDFLAGS1=\"$NCBI_LDFLAGS1\" SHELL=\"$NCBI_MAKE_SHELL\" \ ++ AR=\"$NCBI_AR\" CC=\"$NCBI_CC\" RAN=\"$NCBI_RANLIB\" OTHERLIBS=\"$NCBI_OTHERLIBS\" \ ++ NETENTREZVERSION=\"$NETENTREZVERSION\" copy' + endif +-eval echo $CMD ++eval echo $CPY ++eval echo $CPY | sh ++eval echo $CMD + eval echo $CMD | sh + + set net_stat = $status |