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authorAndrey Kislyuk <weaver@gentoo.org>2009-04-13 00:58:50 +0000
committerAndrey Kislyuk <weaver@gentoo.org>2009-04-13 00:58:50 +0000
commit3212442d1fe3146e422c752bca200986703a017a (patch)
tree676329dba7ac9671881ea785610696155eb3f9bd /sci-biology/mpiblast/files
parentFix the has_version check. Current eclass does not support cmake 2.4... (diff)
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Import from Science overlay
Package-Manager: portage-2.2_rc20/cvs/Linux 2.6.26-gentoo-r4 x86_64
Diffstat (limited to 'sci-biology/mpiblast/files')
-rw-r--r--sci-biology/mpiblast/files/mpiblast-1.5.0-fix-build.patch48
1 files changed, 48 insertions, 0 deletions
diff --git a/sci-biology/mpiblast/files/mpiblast-1.5.0-fix-build.patch b/sci-biology/mpiblast/files/mpiblast-1.5.0-fix-build.patch
new file mode 100644
index 000000000000..93aa68309777
--- /dev/null
+++ b/sci-biology/mpiblast/files/mpiblast-1.5.0-fix-build.patch
@@ -0,0 +1,48 @@
+diff -u mpiblast-1.5.0-pio{_c,}/ncbi/make/makedis.csh
+--- mpiblast-1.5.0-pio_c/ncbi/make/makedis.csh 2006-09-14 11:37:03.000000000 -0400
++++ mpiblast-1.5.0-pio/ncbi/make/makedis.csh 2009-04-02 17:01:08.411742006 -0400
+@@ -419,9 +419,11 @@
+ CFLAGS1=\"$NCBI_OPTFLAG $NCBI_CFLAGS1 $OGL_INCLUDE $PNG_INCLUDE\" \
+ LDFLAGS1=\"$NCBI_LDFLAGS1\" OTHERLIBS=\"$NCBI_OTHERLIBS\" \
+ SHELL=\"$NCBI_MAKE_SHELL\" LCL=\"$NCBI_DEFAULT_LCL\" \
+- RAN=\"$NCBI_RANLIB\" AR=\"$NCBI_AR\" CC=\"$NCBI_CC\" $ALL_VIB all'
+-eval echo $CMD
+-eval echo $CMD | sh
++ RAN=\"$NCBI_RANLIB\" AR=\"$NCBI_AR\" CC=\"$NCBI_CC\" $ALL_VIB '
++eval echo $CMD copy
++eval echo $CMD copy | sh
++eval echo $CMD all
++eval echo $CMD all | sh
+
+ set make_stat = $status
+
+@@ -473,14 +475,28 @@
+ THREAD_OBJ=$NCBI_THREAD_OBJ \
+ THREAD_OTHERLIBS=\"$NCBI_MT_OTHERLIBS\" \
+ NETENTREZVERSION=\"$NETENTREZVERSION\" $NET_VIB'
++ set CPY='make $MFLG -f makenet.unx \
++ CFLAGS1=\"$NCBI_OPTFLAG $NCBI_CFLAGS1 $OGL_INCLUDE\" \
++ LDFLAGS1=\"$NCBI_LDFLAGS1\" SHELL=\"$NCBI_MAKE_SHELL\" \
++ AR=\"$NCBI_AR\" CC=\"$NCBI_CC\" RAN=\"$NCBI_RANLIB\" OTHERLIBS=\"$NCBI_OTHERLIBS\" \
++ THREAD_OBJ=$NCBI_THREAD_OBJ \
++ THREAD_OTHERLIBS=\"$NCBI_MT_OTHERLIBS\" \
++ NETENTREZVERSION=\"$NETENTREZVERSION\" copy'
+ else
+ set CMD='make $MFLG -f makenet.unx \
+ CFLAGS1=\"$NCBI_OPTFLAG $NCBI_CFLAGS1 $OGL_INCLUDE\" \
+ LDFLAGS1=\"$NCBI_LDFLAGS1\" SHELL=\"$NCBI_MAKE_SHELL\" \
+ AR=\"$NCBI_AR\" CC=\"$NCBI_CC\" RAN=\"$NCBI_RANLIB\" OTHERLIBS=\"$NCBI_OTHERLIBS\" \
+ NETENTREZVERSION=\"$NETENTREZVERSION\" $NET_VIB'
++ set CPY='make $MFLG -f makenet.unx \
++ CFLAGS1=\"$NCBI_OPTFLAG $NCBI_CFLAGS1 $OGL_INCLUDE\" \
++ LDFLAGS1=\"$NCBI_LDFLAGS1\" SHELL=\"$NCBI_MAKE_SHELL\" \
++ AR=\"$NCBI_AR\" CC=\"$NCBI_CC\" RAN=\"$NCBI_RANLIB\" OTHERLIBS=\"$NCBI_OTHERLIBS\" \
++ NETENTREZVERSION=\"$NETENTREZVERSION\" copy'
+ endif
+-eval echo $CMD
++eval echo $CPY
++eval echo $CPY | sh
++eval echo $CMD
+ eval echo $CMD | sh
+
+ set net_stat = $status