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* Clean java bits thanks to sera. General cleanup, fix linking order, fix ↵Kacper Kowalik2011-03-266-83/+106
| | | | | | building with gcc 4.6 wrt #360517. Drop old. Package-Manager: portage-2.2.0_alpha27/cvs/Linux x86_64
* Respect LDFLAGS wrt bug 332009. Thanks to Diego for report. Remove old.Kacper Kowalik2010-08-108-169/+18
| | | | Package-Manager: portage-2.1.8.3/cvs/Linux x86_64
* Someone wasn't reading the upstream changelogs ... add an option to build ↵Donnie Berkholz2009-07-273-3/+81
| | | | | | the Java GUI. Package-Manager: portage-2.1.6.13/cvs/Linux x86_64
* Version bump and gcc-4.3 compatibility patch (fixes bug #217921).Markus Dittrich2008-04-175-3/+107
| | | | Package-Manager: portage-2.1.5_rc3
* Fixing repoman minor syntax errorJeffrey Gardner2008-02-033-7/+9
| | | | Package-Manager: portage-2.1.4.1
* Remove all old-style digests from the system and regen the Manifest files.Robin H. Johnson2008-01-313-30/+0
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* Version bump (fixes bug #191861).Markus Dittrich2007-10-136-13/+93
| | | | Package-Manager: portage-2.1.3.12
* New package: Protein multiple-alignment-based sequence annealing. It's based ↵Donnie Berkholz2006-12-116-0/+94
on ProbCons and adds sequence annealing. See the homepage for details. Package-Manager: portage-2.1.2_rc3-r1