From 58630d1369ba2fbf50178d4cb3194db4e2fa1521 Mon Sep 17 00:00:00 2001 From: Olivier Fisette Date: Fri, 3 Nov 2006 01:52:10 +0000 Subject: New upstream version Package-Manager: portage-2.1.1-r1 --- sci-biology/primer3/ChangeLog | 7 +++++- sci-biology/primer3/Manifest | 16 +++++++++---- sci-biology/primer3/files/digest-primer3-1.0b | 3 +++ sci-biology/primer3/primer3-1.0b.ebuild | 33 +++++++++++++++++++++++++++ 4 files changed, 54 insertions(+), 5 deletions(-) create mode 100644 sci-biology/primer3/files/digest-primer3-1.0b create mode 100644 sci-biology/primer3/primer3-1.0b.ebuild (limited to 'sci-biology') diff --git a/sci-biology/primer3/ChangeLog b/sci-biology/primer3/ChangeLog index 0d86f76787b0..262a0ff6f6c2 100644 --- a/sci-biology/primer3/ChangeLog +++ b/sci-biology/primer3/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/primer3 # Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/ChangeLog,v 1.12 2006/11/02 19:08:34 grobian Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/ChangeLog,v 1.13 2006/11/03 01:52:10 ribosome Exp $ + +*primer3-1.0b (03 Nov 2006) + + 03 Nov 2006; Olivier Fisette +primer3-1.0b.ebuild: + New upstream version. 02 Nov 2006; Fabian Groffen primer3-1.0.0.ebuild: Dropped ppc-macos, see you in prefix. diff --git a/sci-biology/primer3/Manifest b/sci-biology/primer3/Manifest index e4163388e141..6959be6edf4f 100644 --- a/sci-biology/primer3/Manifest +++ b/sci-biology/primer3/Manifest @@ -1,12 +1,17 @@ DIST primer3_1.0.0.tar.gz 936696 RMD160 c08329cafcb8bf702a1654b4348a418b20e55c88 SHA1 0227f1f26c8b45dff9033543bee4387ade173c73 SHA256 fcbcf2e540e0062f3fa0d723b443b04a1c31e3e03e3aa5d97e3b2f910499f34b +DIST primer3_1.0b.tar.gz 937824 RMD160 a0ab773aa7af3f8c158f46bf32c658776ba8ba2b SHA1 ea7ca4968437b02033f274c5033f7274b2f42d01 SHA256 54d3f1f7c20850b89f7f393c152afa9f9f93e0c29a58a45710973e13be07c9c7 EBUILD primer3-1.0.0.ebuild 854 RMD160 33c4fd85db4f6f0cb59e8a3df76115b1dd5acd1f SHA1 9f5083f05e34f4ddcd4bfddbce9ffe9273d1360e SHA256 57c0f9b5fcecc6c501e75a4bcd88d0e5b6ecaf2e562b369cbf551ce8eeb4071e MD5 28730bf8d276dea79cfa528cf3d9d55d primer3-1.0.0.ebuild 854 RMD160 33c4fd85db4f6f0cb59e8a3df76115b1dd5acd1f primer3-1.0.0.ebuild 854 SHA256 57c0f9b5fcecc6c501e75a4bcd88d0e5b6ecaf2e562b369cbf551ce8eeb4071e primer3-1.0.0.ebuild 854 -MISC ChangeLog 2100 RMD160 dda3e1d5904f7806a0f6761ab2fa4690da9e3c05 SHA1 54ed53546afe86f56c64b7478a62424860936655 SHA256 3a335f5b98f69d6f0c7b30d1207b9613d30b2e8b13ae50232320560aecaa6f4a -MD5 664267be8256dba5c2804626ac2d8081 ChangeLog 2100 -RMD160 dda3e1d5904f7806a0f6761ab2fa4690da9e3c05 ChangeLog 2100 -SHA256 3a335f5b98f69d6f0c7b30d1207b9613d30b2e8b13ae50232320560aecaa6f4a ChangeLog 2100 +EBUILD primer3-1.0b.ebuild 828 RMD160 d429cbc693fc0f79433c8b54f12bed43eec70612 SHA1 b4132756ed0c0e9b4008d55a8096a2211848eb9c SHA256 c04840d74a541e4fb0e21c5b9e046a7d6bb64611c16a2efd3091403ba7416e56 +MD5 4d55ba4aedb4c55ae5269c94f4030806 primer3-1.0b.ebuild 828 +RMD160 d429cbc693fc0f79433c8b54f12bed43eec70612 primer3-1.0b.ebuild 828 +SHA256 c04840d74a541e4fb0e21c5b9e046a7d6bb64611c16a2efd3091403ba7416e56 primer3-1.0b.ebuild 828 +MISC ChangeLog 2230 RMD160 b9c57cc75cb107b1fac6daec02bea2a6d7d80420 SHA1 c2fe0fe25a04701148c00e4a181ec49c98aa1fa1 SHA256 10d1f4ca26c352a9464c407080117eb1d0bdc3793e34febf814f99fe6a30da21 +MD5 71898559a64b4beee98f72ab2041f7f2 ChangeLog 2230 +RMD160 b9c57cc75cb107b1fac6daec02bea2a6d7d80420 ChangeLog 2230 +SHA256 10d1f4ca26c352a9464c407080117eb1d0bdc3793e34febf814f99fe6a30da21 ChangeLog 2230 MISC metadata.xml 721 RMD160 52ec41dfbf0405bbf4d209a6c940ed519ef90f09 SHA1 7c1c44b75d2cf8549959e2947509e58cd6c433ed SHA256 0add5594c686e3cf605ad8bba0ab855d92bbf75e019ef8b79c3ca802164244ca MD5 8cdd554f8d2dc15deccdb6c23a375bab metadata.xml 721 RMD160 52ec41dfbf0405bbf4d209a6c940ed519ef90f09 metadata.xml 721 @@ -14,3 +19,6 @@ SHA256 0add5594c686e3cf605ad8bba0ab855d92bbf75e019ef8b79c3ca802164244ca metadata MD5 91d7203581da4a746de7b12d26b929a6 files/digest-primer3-1.0.0 241 RMD160 7ddf10bb30198b32859ce793e99b9bde3d585aa0 files/digest-primer3-1.0.0 241 SHA256 e960b016d3d9583d0c812d4758b446570867e0a023366c91f83a0a0c8711ca9e files/digest-primer3-1.0.0 241 +MD5 1edcee8ca67f5d93725b5425d228b69b files/digest-primer3-1.0b 238 +RMD160 9360bf5faa05ab4b934ba1618f1c4d56b52e21db files/digest-primer3-1.0b 238 +SHA256 626655e18ba8d058d30c42dfd9eed65f04fc8287d613c56e2702d268c0450c4f files/digest-primer3-1.0b 238 diff --git a/sci-biology/primer3/files/digest-primer3-1.0b b/sci-biology/primer3/files/digest-primer3-1.0b new file mode 100644 index 000000000000..2f903ec93404 --- /dev/null +++ b/sci-biology/primer3/files/digest-primer3-1.0b @@ -0,0 +1,3 @@ +MD5 6237b2c3ead5f361fe32bbd4d5cb9dfb primer3_1.0b.tar.gz 937824 +RMD160 a0ab773aa7af3f8c158f46bf32c658776ba8ba2b primer3_1.0b.tar.gz 937824 +SHA256 54d3f1f7c20850b89f7f393c152afa9f9f93e0c29a58a45710973e13be07c9c7 primer3_1.0b.tar.gz 937824 diff --git a/sci-biology/primer3/primer3-1.0b.ebuild b/sci-biology/primer3/primer3-1.0b.ebuild new file mode 100644 index 000000000000..26f1f2ac7046 --- /dev/null +++ b/sci-biology/primer3/primer3-1.0b.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2006 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/primer3-1.0b.ebuild,v 1.1 2006/11/03 01:52:10 ribosome Exp $ + +DESCRIPTION="Design primers for PCR reactions." +HOMEPAGE="http://frodo.wi.mit.edu/primer3/primer3_code.html" +SRC_URI="http://frodo.wi.mit.edu/${PN}/${PN}_${PV}.tar.gz" +LICENSE="whitehead" + +SLOT="0" +KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86" +IUSE="" + +DEPEND="dev-lang/perl" + +RDEPEND="" + +S="${WORKDIR}/${PN}_${PV}/src" + +src_compile() { + emake -e || die +} + +src_test () { + cd ../test + perl primer_test.pl primer3_core || die +} + +src_install () { + dobin primer3_core || die "Could not install program." + dodoc ../{how-to-cite.txt,README.${PN}_${PV}.txt,example} || \ + die "Could not install documentation." +} -- cgit v1.2.3-65-gdbad