From b88a693b636e1e96307cdc674362fc46cd9d2be2 Mon Sep 17 00:00:00 2001 From: Andrey Kislyuk Date: Tue, 24 Nov 2009 18:21:23 +0000 Subject: Version bump, take maintainership Package-Manager: portage-2.2_rc30/cvs/Linux x86_64 --- sci-biology/t-coffee/ChangeLog | 8 ++++- sci-biology/t-coffee/Manifest | 6 ++-- sci-biology/t-coffee/metadata.xml | 4 +++ sci-biology/t-coffee/t-coffee-8.14.ebuild | 60 +++++++++++++++++++++++++++++++ 4 files changed, 75 insertions(+), 3 deletions(-) create mode 100644 sci-biology/t-coffee/t-coffee-8.14.ebuild (limited to 'sci-biology') diff --git a/sci-biology/t-coffee/ChangeLog b/sci-biology/t-coffee/ChangeLog index b5b266530c59..4b7872f69ac7 100644 --- a/sci-biology/t-coffee/ChangeLog +++ b/sci-biology/t-coffee/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/t-coffee # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.36 2009/03/24 21:32:36 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.37 2009/11/24 18:21:23 weaver Exp $ + +*t-coffee-8.14 (24 Nov 2009) + + 24 Nov 2009; Andrey Kislyuk metadata.xml, + +t-coffee-8.14.ebuild: + Version bump, assume maintainership 24 Mar 2009; Olivier Fisette metadata.xml: Giving up maintainership of this package. diff --git a/sci-biology/t-coffee/Manifest b/sci-biology/t-coffee/Manifest index 286eadb8fb01..fe00007918c3 100644 --- a/sci-biology/t-coffee/Manifest +++ b/sci-biology/t-coffee/Manifest @@ -2,9 +2,11 @@ DIST T-COFFEE_distribution_Version_5.31.tar.gz 2857478 RMD160 95cb261c57fe31b3c2 DIST T-COFFEE_distribution_Version_5.65.tar.gz 2892013 RMD160 50c04dfbda649ebbf0e691a74bd62433bb1dbd14 SHA1 a8dc4bcc37eaa8237670c9daf1b260c8452fab89 SHA256 536cfe25648fbaf4d96baf36b3c8d4d2d81e97b2939e09e89880cae39893d0c6 DIST T-COFFEE_distribution_Version_6.82.tar.gz 2377424 RMD160 01e7e43da5637114ded1f5509f3fae605ed4f08b SHA1 ea02ed7908a3628772ea72bc4226529586247580 SHA256 23329516078fa0d242a0160e807e71bbe221462323892f8ddcc62affa569628a DIST T-COFFEE_distribution_Version_7.54.tar.gz 3968725 RMD160 d11964db5232d137bf0db8101dfb75b1fde25936 SHA1 a302954a10860455bc23f924628598757c39eb12 SHA256 9d7d56abc000b61b48908fa4f93fb382a35df11c883966a0119605cd16aa668e +DIST T-COFFEE_distribution_Version_8.14.tar.gz 4202237 RMD160 b292e4d4dd6576ad10dacafbb19eaa4f9154b85c SHA1 0286f719569f6717f879b38af520939f4399ab07 SHA256 ffc527e65e81cabc912a2816895efd46fb28bbd45e50327cd7e5d01ba88bcb03 EBUILD t-coffee-5.31.ebuild 1997 RMD160 7612d1f86bd8b702c196b0269f093fad63482be2 SHA1 bf6f4e8de8e451207d618de60b56926d5fd0b525 SHA256 f19291307534c6168cc046c0c8a74d622aa63197d07bdff756c18a6e9159bc55 EBUILD t-coffee-5.65.ebuild 1999 RMD160 7ae18da2d689343547258b54f1de66f289f47114 SHA1 6518aae4c5e8b9bc55eaff6c0e763ae22995c393 SHA256 25d353182a9e946df52ad7dea404800a169067c77441c8d2456042b0cbea4d25 EBUILD t-coffee-6.82.ebuild 1838 RMD160 79975b36ece635a8473b9843a04d19e7bdf16584 SHA1 6b0957b53cbcc8bfc945ea32613718dc8ff30fce SHA256 3ec2720e76effedc6f76d81c273de59a3ef1fe9aa16a4258923245b2543e0d2f EBUILD t-coffee-7.54.ebuild 1857 RMD160 ee23165c9f4e40b608c960d6c14886b1a680a4e6 SHA1 eb77681d7a1facb7fdab7c0ca45fe6dc02b99e61 SHA256 3da47ef23cf41088177fe5c8b90f96627c0f29f777145e79bf28b7aab618f372 -MISC ChangeLog 4871 RMD160 92640b6b071ce805cb8b90be3e8658c0a8dc39e5 SHA1 651e23fcf50aeb157e5b9d7e9eced6b2b1451e70 SHA256 19e9a9a8fc9ec98afe31356fc50d010a5315d5afade7f3b5030f8a620076c52f -MISC metadata.xml 666 RMD160 ec61eb719b37e3163f0c115b796c5b87d934711f SHA1 3109f9ecbe3a2f682b440feb9386c3bc11bcd027 SHA256 bac3acc4bbb40a72054a3a37b32f81221d0656eebad9c23dffb595d3146f646a +EBUILD t-coffee-8.14.ebuild 1866 RMD160 a873c3052cdcf6bed77352273750f3a13577d8e6 SHA1 a98f6ee46f85c9e8ee80ebf3df6714dbee0a0297 SHA256 34eebb96c8d0aec7eb47c04fbe82d6669fcb657e88240e6b8d6724c6c87b5c47 +MISC ChangeLog 5027 RMD160 97eeb22998cc18d9b29b6b42b67516dc982549cd SHA1 86ddd287c2ba129280bbdfbd170ab9e5f982ccda SHA256 03d94f1d24bb6dd3cad8875279716145490ebfe3fcbd75f7ac01432fca22da61 +MISC metadata.xml 760 RMD160 b9b95d31917ca092fbc88aaf871ffc6c22746860 SHA1 ee9d60b1947e1fb1542488003713ec1bcf3f3b71 SHA256 9d60cbec2e12219f15e311a1e8cb694b77fd7897c98186be3012f815c0f7bd12 diff --git a/sci-biology/t-coffee/metadata.xml b/sci-biology/t-coffee/metadata.xml index 228a09e08036..3ea57edd4222 100644 --- a/sci-biology/t-coffee/metadata.xml +++ b/sci-biology/t-coffee/metadata.xml @@ -1,6 +1,10 @@ + + weaver@gentoo.org + Andrey Kislyuk + sci-biology T-Coffee is a multiple sequence alignment package. Given a set of diff --git a/sci-biology/t-coffee/t-coffee-8.14.ebuild b/sci-biology/t-coffee/t-coffee-8.14.ebuild new file mode 100644 index 000000000000..773631d503d6 --- /dev/null +++ b/sci-biology/t-coffee/t-coffee-8.14.ebuild @@ -0,0 +1,60 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-8.14.ebuild,v 1.1 2009/11/24 18:21:23 weaver Exp $ + +EAPI="2" + +inherit toolchain-funcs flag-o-matic + +DESCRIPTION="A multiple sequence alignment package" +LICENSE="GPL-2" +HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html" +SRC_URI="http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz" + +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~ppc ~x86" + +DEPEND="sci-biology/clustalw" +RDEPEND="${DEPEND}" + +TCDIR="${WORKDIR}/T-COFFEE_distribution_Version_${PV}" +S="${TCDIR}/t_coffee_source" + +die_compile() { + echo + eerror "If you experience an internal compiler error (consult the above" + eerror "messages), try compiling t-coffee using very modest compiler flags." + eerror "See bug #114745 on the Gentoo Bugzilla for more details." + die "Compilation failed" +} + +src_compile() { + [[ $(gcc-version) == "3.4" ]] && append-flags -fno-unit-at-a-time + [[ $(gcc-version) == "4.1" ]] && append-flags -fno-unit-at-a-time + CC="$(tc-getCC)" CFLAGS="${CFLAGS}" emake || die_compile +} + +src_install() { + dobin t_coffee || die "Failed to install program." + + insinto /usr/share/${PN}/lib/html + doins "${TCDIR}"/html/* \ + || die "Failed to install Web interface files." + + cd "${TCDIR}"/doc + dodoc aln_compare.doc.txt seq_reformat.doc.txt \ + t_coffee_technical.txt t_coffee_tutorial.txt \ + || die "Failed to install text documentation." + + dohtml t_coffee_technical.htm t_coffee_tutorial.htm \ + || die "Failed to install HTML documentation." + + insinto /usr/share/doc/${PF} + doins t_coffee_technical.doc t_coffee_tutorial.doc \ + || die "Failed to install DOC documentation." + + insinto /usr/share/${PN}/example + doins "${TCDIR}"/example/* \ + || die "Failed to install example files." +} -- cgit v1.2.3-65-gdbad