From f7bf8cf20fe4bdd31a226b2ff333e05927f9cc3d Mon Sep 17 00:00:00 2001 From: Justin Lecher Date: Tue, 17 Sep 2013 15:37:31 +0000 Subject: sci-biology/bamtools: Version Bump, drop old, #482636; thanks Martin Mokrejš for the patch MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Package-Manager: portage-2.2.6/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB! --- sci-biology/bamtools/ChangeLog | 8 ++++++- sci-biology/bamtools/Manifest | 27 ++++++++++++++------- sci-biology/bamtools/bamtools-2.2.3.ebuild | 28 ---------------------- sci-biology/bamtools/bamtools-2.3.0.ebuild | 28 ++++++++++++++++++++++ .../bamtools/files/bamtools-2.3.0-unbundle.patch | 23 ++++++++++++++++++ 5 files changed, 77 insertions(+), 37 deletions(-) delete mode 100644 sci-biology/bamtools/bamtools-2.2.3.ebuild create mode 100644 sci-biology/bamtools/bamtools-2.3.0.ebuild create mode 100644 sci-biology/bamtools/files/bamtools-2.3.0-unbundle.patch (limited to 'sci-biology') diff --git a/sci-biology/bamtools/ChangeLog b/sci-biology/bamtools/ChangeLog index 5dc7e430bff4..095aee2c5f3a 100644 --- a/sci-biology/bamtools/ChangeLog +++ b/sci-biology/bamtools/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/bamtools # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bamtools/ChangeLog,v 1.9 2013/08/27 14:59:18 jer Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bamtools/ChangeLog,v 1.10 2013/09/17 15:37:30 jlec Exp $ + +*bamtools-2.3.0 (17 Sep 2013) + + 17 Sep 2013; Justin Lecher -bamtools-2.2.3.ebuild, + +bamtools-2.3.0.ebuild, +files/bamtools-2.3.0-unbundle.patch: + Version Bump, drop old, #482636; thanks Martin Mokrejš for the patch 27 Aug 2013; Jeroen Roovers metadata.xml: Update e-mail address. diff --git a/sci-biology/bamtools/Manifest b/sci-biology/bamtools/Manifest index b50a459bcc58..8a7e61fee19d 100644 --- a/sci-biology/bamtools/Manifest +++ 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-inherit cmake-utils - -DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files" -HOMEPAGE="https://github.com/pezmaster31/bamtools" -SRC_URI="https://github.com/pezmaster31/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="static-libs" - -DEPEND=" - >=dev-libs/jsoncpp-0.5.0-r1 - sys-libs/zlib" -RDEPEND="${DEPEND}" - -PATCHES=( "${FILESDIR}"/${P}-unbundle.patch ) - -src_install() { - cmake-utils_src_install - use static-libs || rm "${ED}"/usr/$(get_libdir)/*.a -} diff --git a/sci-biology/bamtools/bamtools-2.3.0.ebuild b/sci-biology/bamtools/bamtools-2.3.0.ebuild new file mode 100644 index 000000000000..b7153e88486e --- /dev/null +++ b/sci-biology/bamtools/bamtools-2.3.0.ebuild @@ -0,0 +1,28 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bamtools/bamtools-2.3.0.ebuild,v 1.1 2013/09/17 15:37:30 jlec Exp $ + +EAPI=5 + +inherit cmake-utils + +DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files" +HOMEPAGE="https://github.com/pezmaster31/bamtools" +SRC_URI="https://github.com/pezmaster31/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="static-libs" + +DEPEND=" + >=dev-libs/jsoncpp-0.5.0-r1 + sys-libs/zlib" +RDEPEND="${DEPEND}" + +PATCHES=( "${FILESDIR}"/${P}-unbundle.patch ) + +src_install() { + cmake-utils_src_install + use static-libs || rm "${ED}"/usr/$(get_libdir)/*.a +} diff --git a/sci-biology/bamtools/files/bamtools-2.3.0-unbundle.patch b/sci-biology/bamtools/files/bamtools-2.3.0-unbundle.patch new file mode 100644 index 000000000000..c07c59d2cddd --- /dev/null +++ b/sci-biology/bamtools/files/bamtools-2.3.0-unbundle.patch @@ -0,0 +1,23 @@ +--- bamtools-2.3.0/src/api/CMakeLists.txt.ori 2013-08-27 18:00:43.000000000 +0200 ++++ bamtools-2.3.0/src/api/CMakeLists.txt 2013-08-27 18:00:47.000000000 +0200 +@@ -54,8 +54,8 @@ + target_link_libraries( BamTools-static ${APILibs} ) + + # set library install destinations +-install( TARGETS BamTools LIBRARY DESTINATION "lib/bamtools" RUNTIME DESTINATION "bin") +-install( TARGETS BamTools-static ARCHIVE DESTINATION "lib/bamtools") ++install( TARGETS BamTools LIBRARY DESTINATION "lib${LIB_SUFFIX}" RUNTIME DESTINATION "bin") ++install( TARGETS BamTools-static ARCHIVE DESTINATION "lib${LIB_SUFFIX}") + + # export API headers + include(../ExportHeader.cmake) +--- bamtools-2.3.0/src/CMakeLists.txt.ori 2013-08-27 18:03:10.000000000 +0200 ++++ bamtools-2.3.0/src/CMakeLists.txt 2013-08-27 18:03:23.000000000 +0200 +@@ -6,7 +6,6 @@ + # ========================== + + add_subdirectory( api ) +-add_subdirectory( third_party ) + add_subdirectory( toolkit ) + add_subdirectory( utils ) + -- cgit v1.2.3-65-gdbad