# Copyright 1999-2011 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-libs/ccp4-libs/ccp4-libs-6.1.3-r5.ebuild,v 1.3 2011/01/15 11:57:01 jlec Exp $ EAPI="3" inherit eutils gnuconfig multilib toolchain-funcs SRC="ftp://ftp.ccp4.ac.uk/ccp4" #UPDATE="04_03_09" #PATCHDATE="090511" MY_P="${P/-libs}" PATCH_TOT="0" # Here's a little scriptlet to generate this list from the provided # index.patches file # # i=1; while read -a line; do [[ ${line//#} != ${line} ]] && continue; # echo "PATCH${i}=( ${line[1]}"; echo "${line[0]} )"; (( i++ )); done < # index.patches #PATCH1=( src/topp_ #topp.f-r1.16.2.5-r1.16.2.6.diff ) #PATCH2=( . #configure-r1.372.2.18-r1.372.2.19.diff ) DESCRIPTION="Protein X-ray crystallography toolkit - Libraries" HOMEPAGE="http://www.ccp4.ac.uk/" SRC_URI="${SRC}/${PV}/${MY_P}-core-src.tar.gz" # patch tarball from upstream [[ -n ${UPDATE} ]] && SRC_URI="${SRC_URI} ${SRC}/${PV}/updates/${P}-src-patch-${UPDATE}.tar.gz" # patches created by us [[ -n ${PATCHDATE} ]] && SRC_URI="${SRC_URI} http://dev.gentooexperimental.org/~jlec/science-dist/${PV}-${PATCHDATE}-updates.patch.bz2" for i in $(seq $PATCH_TOT); do NAME="PATCH${i}[1]" SRC_URI="${SRC_URI} ${SRC}/${PV}/patches/${!NAME}" done LICENSE="ccp4" SLOT="0" KEYWORDS="~amd64 x86 ~amd64-linux ~x86-linux" IUSE="" RDEPEND=" virtual/jpeg app-shells/tcsh !& /dev/null ccp_patch "${DISTDIR}/${p}" popd >& /dev/null done einfo "Done." echo [[ -n ${PATCHDATE} ]] && epatch "${WORKDIR}"/${PV}-${PATCHDATE}-updates.patch einfo "Applying Gentoo patches ..." # fix buffer overflows wrt bug 339706 ccp_patch "${FILESDIR}"/${PV}-overflows.patch # it tries to create libdir, bindir etc on live system in configure ccp_patch "${FILESDIR}"/${PV}-dont-make-dirs-in-configure.patch # gerror_ gets defined twice on ppc if you're using gfortran/g95 ccp_patch "${FILESDIR}"/6.0.2-ppc-double-define-gerror.patch # make creation of libccif.so smooth ccp_patch "${FILESDIR}"/${PV}-ccif-shared.patch # lets try to build libmmdb seperatly ccp_patch "${FILESDIR}"/${PV}-dont-build-mmdb.patch # unbundle libjpeg and cbflib ccp_patch "${FILESDIR}"/${PV}-unbundle-libs.patch # Fix missing DESTIDR # not installing during build ccp_patch "${FILESDIR}"/${PV}-noinstall.patch sed \ -e '/SHARE_INST/s:$(libdir):$(DESTDIR)/$(libdir):g' \ -i configure || die einfo "Done." # done applying Gentoo patches echo sed \ -e "s:/usr:${EPREFIX}/usr:g" \ -e 's:-Wl,-rpath,$CLIB::g' \ -e 's: -rpath $CLIB::g' \ -e 's: -I${srcdir}/include/cpp_c_headers::g' \ -i configure || die gnuconfig_update } src_configure() { rm -rf lib/DiffractionImage/{jpg,CBFlib} || die # Build system is broken if we set LDFLAGS userldflags="${LDFLAGS}" export SHARED_LIB_FLAGS="${LDFLAGS}" unset LDFLAGS # GENTOO_OSNAME can be one of: # irix irix64 sunos sunos64 aix hpux osf1 linux freebsd # linux_compaq_compilers linux_intel_compilers generic Darwin # ia64_linux_intel Darwin_ibm_compilers linux_ibm_compilers if [[ "$(tc-getFC)" = "ifort" ]]; then if use ia64; then GENTOO_OSNAME="ia64_linux_intel" else # Should be valid for x86, maybe amd64 GENTOO_OSNAME="linux_intel_compilers" fi else # Should be valid for x86 and amd64, at least GENTOO_OSNAME="linux" fi # Sets up env ln -s \ ccp4.setup-bash \ "${S}"/include/ccp4.setup # We agree to the license by emerging this, set in LICENSE sed -i \ -e "s~^\(^agreed=\).*~\1yes~g" \ "${S}"/configure # Fix up variables -- need to reset CCP4_MASTER at install-time sed -i \ -e "s~^\(setenv CCP4_MASTER.*\)/.*~\1"${WORKDIR}"~g" \ -e "s~^\(setenv CCP4I_TCLTK.*\)/usr/local/bin~\1${EPREFIX}/usr/bin~g" \ "${S}"/include/ccp4.setup* # Set up variables for build source "${S}"/include/ccp4.setup export CC=$(tc-getCC) export CXX=$(tc-getCXX) export COPTIM=${CFLAGS} export CXXOPTIM=${CXXFLAGS} # Default to -O2 if FFLAGS is unset export FC=$(tc-getFC) export FOPTIM=${FFLAGS:- -O2} # Fix linking # $(tc-getCC) ${userldflags} -shared -Wl,-soname,libmmdb.so -o libmmdb.so \${MMDBOBJS} $(gcc-config -L | awk -F: '{for(i=1; i<=NF; i++) printf " -L%s", $i}') -lm -lstdc++ && \ export SHARE_LIB="\ $(tc-getCC) ${userldflags} -shared -Wl,-soname,libccp4c.so -o libccp4c.so \${CORELIBOBJS} \${CGENERALOBJS} \${CUCOBJS} \${CMTZOBJS} \${CMAPOBJS} \${CSYMOBJS} -L../ccif/ -lccif $(gcc-config -L | awk -F: '{for(i=1; i<=NF; i++) printf " -L%s", $i}') -lm && \ $(tc-getFC) ${userldflags} -shared -Wl,-soname,libccp4f.so -o libccp4f.so \${FORTRANLOBJS} \${FINTERFACEOBJS} -L../ccif/ -lccif -L. -lccp4c -lmmdb $(gcc-config -L | awk -F: '{for(i=1; i<=NF; i++) printf " -L%s", $i}') -lstdc++ -lgfortran -lm" # Can't use econf, configure rejects unknown options like --prefix ./configure \ --onlylibs \ --with-shared-libs \ --with-fftw="${EPREFIX}"/usr \ --with-warnings \ --disable-cctbx \ --disable-clipper \ --tmpdir="${TMPDIR}" \ --bindir="${EPREFIX}"/usr/libexec/ccp4/bin/ \ --libdir="${EPREFIX}"/usr/$(get_libdir) \ ${GENTOO_OSNAME} || die "econf failed" } src_compile() { emake -j1 \ DESTDIR="${D}" onlylib || die "emake failed" } src_install() { # Set up variables for build source "${S}"/include/ccp4.setup emake -j1 \ DESTDIR="${D}" \ includedir="${EPREFIX}"/usr/include \ library_includedir="${EPREFIX}"/usr/include \ install || die # Libs for file in "${S}"/lib/*; do if [[ -d ${file} ]]; then continue elif [[ -x ${file} ]]; then dolib.so ${file} || die else insinto /usr/$(get_libdir) doins ${file} || die fi done # Fix libdir in all *.la files sed -i \ -e "s:^\(libdir=\).*:\1\'${EPREFIX}/usr/$(get_libdir)\':g" \ "${ED}"/usr/$(get_libdir)/*.la || die # Data insinto /usr/share/ccp4/data/ doins -r "${S}"/lib/data/{*.PARM,*.prt,*.lib,*.dic,*.idl,*.cif,*.resource,*.york,*.hist,fraglib,reference_structures} || die # Environment files, setup scripts, etc. rm -rf "${S}"/include/{ccp4.setup*,COPYING,cpp_c_headers} || die insinto /usr/share/ccp4/ doins -r "${S}"/include || die dodoc "${S}"/lib/data/*.doc || die newdoc "${S}"/lib/data/README DATA-README || die } # Epatch wrapper for bulk patching ccp_patch() { EPATCH_SINGLE_MSG=" ${1##*/} ..." epatch ${1} }