diff options
| author |   Repository QA checks <repo-qa-checks@gentoo.org> | 2015-11-15 16:32:43 -0500 |
|---|---|---|
| committer | Repository QA checks <repo-qa-checks@gentoo.org> | 2015-11-15 16:32:43 -0500 |
| commit | b7cdb3a5d33897dc31a7c8573fbc2a5479a13563 (patch) | |
| tree | e72de8d870009073dcb48e297b94e342cbb6e72c /9.txt | |
| parent | 2015-11-15 20:59:16 UTC (diff) | |
| download | gentoo-ci-b7cdb3a5d33897dc31a7c8573fbc2a5479a13563.tar.gz gentoo-ci-b7cdb3a5d33897dc31a7c8573fbc2a5479a13563.tar.bz2 gentoo-ci-b7cdb3a5d33897dc31a7c8573fbc2a5479a13563.zip | |
2015-11-15 21:13:52 UTC
Diffstat (limited to '9.txt')
| -rw-r--r-- | 9.txt | 542 |
1 files changed, 251 insertions, 291 deletions
@@ -4,7 +4,7 @@ + [[ ! -n 16 ]] + [[ 9 == global ]] + set +x -+ exec pkgcheck -r gentoo --reporter FancyReporter 'net-misc/*' 'kde-apps/*' 'sci-biology/*' 'x11-themes/*' 'net-dns/*' 'www-servers/*' 'dev-dotnet/*' 'lxqt-base/*' 'xfce-base/*' 'net-voip/*' -d imlate -d unstable_only -d cleanup -d stale_unstable -d UnusedGlobalFlags -d UnusedLicense --profile-disable-dev --profile-disable-exp ++ exec pkgcheck -r gentoo --reporter FancyReporter 'net-misc/*' 'kde-apps/*' 'sys-libs/*' 'x11-themes/*' 'net-dns/*' 'www-servers/*' 'dev-dotnet/*' 'lxqt-base/*' 'xfce-base/*' 'net-voip/*' -d imlate -d unstable_only -d cleanup -d stale_unstable -d UnusedGlobalFlags -d UnusedLicense --profile-disable-dev --profile-disable-exp /home/mgorny/pkgcore-venv/lib/python2.7/site-packages/pkgcheck/glsa_scan.py:98: UserWarning: disabling GLSA checks due to no glsa source being found, and the check not being explicitly enabled; this behaviour may change "disabling GLSA checks due to no glsa source " WARNING pkgcore: metadata.dtd cannot be opened from @@ -1077,334 +1077,294 @@ WARNING pkgcore: metadata.dtd cannot be opened from : /home/mgorny/repos/gentoo/metadata/dtd/metadata.dtd, will : refetch -sci-biology/aaindex - DeprecatedEAPI: version 9.1: uses deprecated EAPI: 0 - -sci-biology/abyss - DeprecatedEAPI: version 1.3.3: uses deprecated EAPI: 4 - -sci-biology/allpathslg - DeprecatedEAPI: version 42337: uses deprecated EAPI: 4 - -sci-biology/amap - DeprecatedEAPI: version 2.2-r2: uses deprecated EAPI: 2 - -sci-biology/amos - DeprecatedEAPI: version 3.1.0: uses deprecated EAPI: 4 - -sci-biology/arb - DeprecatedEAPI: version 5.1-r1: uses deprecated EAPI: 2 - DeprecatedEAPI: version 5.2: uses deprecated EAPI: 4 - DeprecatedEAPI: version 5.3: uses deprecated EAPI: 4 - -sci-biology/ariadne - DeprecatedEAPI: version 1.3-r1: uses deprecated EAPI: 0 - DeprecatedEAPI: version 1.3-r2: uses deprecated EAPI: 4 - -sci-biology/augustus - DeprecatedEAPI: version 2.5.5: uses deprecated EAPI: 4 - -sci-biology/bamtools - DeprecatedEAPI: version 1.0.2: uses deprecated EAPI: 4 - -sci-biology/beast-mcmc - DeprecatedEAPI: version 9999: uses deprecated EAPI: 2 - -sci-biology/bedtools - DeprecatedEAPI: version 2.16.2: uses deprecated EAPI: 4 - DeprecatedEAPI: version 2.20.1: uses deprecated EAPI: 4 - -sci-biology/biogrep - DeprecatedEAPI: version 1.0: uses deprecated EAPI: 0 - DeprecatedEAPI: version 1.0-r1: uses deprecated EAPI: 3 - -sci-biology/biojava - DeprecatedEAPI: version 1.6: uses deprecated EAPI: 2 - DeprecatedEAPI: version 1.7: uses deprecated EAPI: 2 - -sci-biology/bioperl - DeprecatedEclass: version 9999-r1: uses deprecated eclass(es): [ git-2 (migrate to git-r3) ] - -sci-biology/bioperl-db - DeprecatedEclass: version 9999-r1: uses deprecated eclass(es): [ git-2 (migrate to git-r3) ] - -sci-biology/bioperl-network - DeprecatedEclass: version 9999-r1: uses deprecated eclass(es): [ git-2 (migrate to git-r3) ] - -sci-biology/bioperl-run - DeprecatedEclass: version 9999-r1: uses deprecated eclass(es): [ git-2 (migrate to git-r3) ] +sys-libs/argp-standalone + DeprecatedEAPI: version 1.3: uses deprecated EAPI: 4 -sci-biology/bioruby +sys-libs/cracklib + DeprecatedEAPI: version 2.9.1-r1: uses deprecated EAPI: 4 + +sys-libs/csu + DeprecatedEAPI: version 79: uses deprecated EAPI: 3 + +sys-libs/db + DeprecatedEAPI: version 1.85-r3: uses deprecated EAPI: 0 + DeprecatedEAPI: version 3.2.9_p2: uses deprecated EAPI: 0 + DeprecatedEAPI: version 4.2.52_p5-r1: uses deprecated EAPI: 0 + DeprecatedEAPI: version 4.3.29_p1-r1: uses deprecated EAPI: 0 + DeprecatedEAPI: version 4.4.20_p4-r1: uses deprecated EAPI: 0 + DeprecatedEAPI: version 4.5.20_p2-r1: uses deprecated EAPI: 0 + DeprecatedEAPI: version 4.6.21_p4: uses deprecated EAPI: 0 + DeprecatedEAPI: version 4.7.25_p4: uses deprecated EAPI: 0 + DeprecatedEAPI: version 4.8.30-r1: uses deprecated EAPI: 4 + DroppedKeywordWarning: version 4.4.20_p4-r1: keywords dropped: alpha, hppa + DroppedKeywordWarning: version 5.1.29-r1: keywords dropped: mips + +sys-libs/e2fsprogs-libs + DeprecatedEAPI: version 1.41.7: uses deprecated EAPI: 2 + DeprecatedEAPI: version 1.42.12: uses deprecated EAPI: 4 + DeprecatedEAPI: version 1.42.13: uses deprecated EAPI: 4 + +sys-libs/fortify-headers DeprecatedEclass: version 9999: uses deprecated eclass(es): [ git-2 (migrate to git-r3) ] -sci-biology/biosql - DeprecatedEAPI: version 1.0.1: uses deprecated EAPI: 0 - -sci-biology/blat - DeprecatedEAPI: version 34: uses deprecated EAPI: 0 - DeprecatedEAPI: version 34-r1: uses deprecated EAPI: 4 - -sci-biology/blossoc - DeprecatedEAPI: version 1.4.0: uses deprecated EAPI: 2 - -sci-biology/bowtie - DeprecatedEAPI: version 0.12.8: uses deprecated EAPI: 4 - -sci-biology/cd-hit - DeprecatedEAPI: version 4.5.1: uses deprecated EAPI: 3 - DeprecatedEAPI: version 4.5.4: uses deprecated EAPI: 4 - DeprecatedEAPI: version 4.6: uses deprecated EAPI: 4 - -sci-biology/clustalw - DeprecatedEAPI: version 2.1: uses deprecated EAPI: 4 - DroppedKeywordWarning: version 2.1: keywords dropped: alpha, ppc, ppc64, sparc - -sci-biology/clustalw-mpi - DeprecatedEAPI: version 0.13-r1: uses deprecated EAPI: 4 - -sci-biology/consed - DeprecatedEAPI: version 19-r2: uses deprecated EAPI: 3 - MissingChksum: version 19-r2: "consed-19-sources.tar.gz" missing required chksums: sha512, whirlpool; has chksums: sha256, size - MissingChksum: version 19-r2: "consed-19-linux.tar.gz" missing required chksums: sha512, whirlpool; has chksums: sha256, size - -sci-biology/cufflinks - SizeViolation: "files/cufflinks-1.3.0-boost.patch" exceeds 20k in size; 52005 bytes total - -sci-biology/elph - DeprecatedEAPI: version 0.1.5: uses deprecated EAPI: 0 - DeprecatedEAPI: version 1.0.1: uses deprecated EAPI: 0 - -sci-biology/exonerate - DeprecatedEAPI: version 2.2.0-r1: uses deprecated EAPI: 4 - -sci-biology/express - DeprecatedEAPI: version 0.9.5: uses deprecated EAPI: 4 - -sci-biology/fasta - DeprecatedEAPI: version 35.4.10: uses deprecated EAPI: 2 - -sci-biology/foldingathome - DeprecatedEAPI: version 7.3.6-r2: uses deprecated EAPI: 4 - DeprecatedEAPI: version 7.4.4: uses deprecated EAPI: 4 - -sci-biology/gatk +sys-libs/freeipmi + DeprecatedEAPI: version 1.2.2: uses deprecated EAPI: 4 + +sys-libs/gdbm + DeprecatedEAPI: version 1.8.3-r3: uses deprecated EAPI: 0 + DeprecatedEAPI: version 1.8.3-r4: uses deprecated EAPI: 0 + DeprecatedEAPI: version 1.9.1-r2: uses deprecated EAPI: 3 + DeprecatedEAPI: version 1.10: uses deprecated EAPI: 4 + DeprecatedEAPI: version 1.10-r1: uses deprecated EAPI: 4 + DeprecatedEAPI: version 1.11: uses deprecated EAPI: 4 + +sys-libs/glibc + DeprecatedEAPI: version 2.17: uses deprecated EAPI: 0 + DeprecatedEAPI: version 2.18-r1: uses deprecated EAPI: 0 + DeprecatedEAPI: version 2.19-r1: uses deprecated EAPI: 0 + DeprecatedEAPI: version 2.20-r2: uses deprecated EAPI: 4 + DeprecatedEAPI: version 2.21-r1: uses deprecated EAPI: 4 + DeprecatedEAPI: version 2.22-r1: uses deprecated EAPI: 4 DeprecatedEclass: version 9999: uses deprecated eclass(es): [ git-2 (migrate to git-r3) ] + DeprecatedEAPI: version 9999: uses deprecated EAPI: 4 -sci-biology/gibbs - DeprecatedEAPI: version 3.1: uses deprecated EAPI: 4 - -sci-biology/glimmerhmm - DeprecatedEAPI: version 3.0.1-r1: uses deprecated EAPI: 4 - -sci-biology/gmap - DeprecatedEAPI: version 2011.10.07: uses deprecated EAPI: 2 - DeprecatedEAPI: version 2012.07.20: uses deprecated EAPI: 4 - -sci-biology/goby - DeprecatedEAPI: version 1.9.7.3: uses deprecated EAPI: 4 - DeprecatedEAPI: version 1.9.8.1: uses deprecated EAPI: 4 +sys-libs/gpm + DeprecatedEAPI: version 1.20.6: uses deprecated EAPI: 2 + DeprecatedEAPI: version 1.20.6-r1: uses deprecated EAPI: 4 + DeprecatedEAPI: version 1.20.7: uses deprecated EAPI: 4 + DeprecatedEAPI: version 1.20.7-r1: uses deprecated EAPI: 4 + DeprecatedEAPI: version 1.20.7-r2: uses deprecated EAPI: 4 -sci-biology/goby-cpp - DeprecatedEAPI: version 1.9.7.3: uses deprecated EAPI: 4 - DeprecatedEAPI: version 1.9.8.1: uses deprecated EAPI: 4 - SizeViolation: "files/Alignments.proto" exceeds 20k in size; 26192 bytes total +sys-libs/gwenhywfar + DeprecatedEAPI: version 4.3.3: uses deprecated EAPI: 4 -sci-biology/hmmer - NonExistentDeps: version 2.3.2-r1: depset depends: nonexistent atoms [ sys-cluster/pvm ] - NonExistentDeps: version 2.3.2-r1: depset rdepends: nonexistent atoms [ sys-cluster/pvm ] - DeprecatedEAPI: version 2.3.2-r1: uses deprecated EAPI: 0 - NonExistentDeps: version 2.3.2-r2: depset depends: nonexistent atoms [ sys-cluster/pvm ] - NonExistentDeps: version 2.3.2-r2: depset rdepends: nonexistent atoms [ sys-cluster/pvm ] - DeprecatedEAPI: version 2.3.2-r2: uses deprecated EAPI: 0 - DeprecatedEAPI: version 3.0: uses deprecated EAPI: 4 - DroppedKeywordWarning: version 3.0: keywords dropped: alpha, ia64, ppc, ppc64, sparc +sys-libs/itx-bind + DeprecatedEAPI: version 0.1-r2: uses deprecated EAPI: 2 + +sys-libs/ldb + DeprecatedEclass: version 1.1.12: uses deprecated eclass(es): [ python (migrate to python-r1 / python-single-r1 / python-any-r1) ] + DeprecatedEAPI: version 1.1.12: uses deprecated EAPI: 4 + DeprecatedEclass: version 1.1.15: uses deprecated eclass(es): [ python (migrate to python-r1 / python-single-r1 / python-any-r1) ] + DeprecatedEAPI: version 1.1.15: uses deprecated EAPI: 4 + DroppedKeywordWarning: version 1.1.17-r1: keywords dropped: sparc + +sys-libs/libaal + DeprecatedEAPI: version 1.0.5: uses deprecated EAPI: 0 + DeprecatedEAPI: version 1.0.5-r1: uses deprecated EAPI: 4 + DeprecatedEAPI: version 1.0.6: uses deprecated EAPI: 4 + +sys-libs/libacpi + DeprecatedEAPI: version 0.2: uses deprecated EAPI: 2 + +sys-libs/libavc1394 + DeprecatedEAPI: version 0.5.3: uses deprecated EAPI: 0 + DeprecatedEAPI: version 0.5.4: uses deprecated EAPI: 4 + DeprecatedEAPI: version 0.5.4-r1: uses deprecated EAPI: 4 + +sys-libs/libcap + DeprecatedEAPI: version 2.22-r2: uses deprecated EAPI: 4 + DeprecatedEAPI: version 2.24-r2: uses deprecated EAPI: 4 + +sys-libs/libcap-ng + DeprecatedEclass: version 0.6.6: uses deprecated eclass(es): [ python (migrate to python-r1 / python-single-r1 / python-any-r1) ] + DeprecatedEAPI: version 0.6.6: uses deprecated EAPI: 4 + DeprecatedEclass: version 0.7.3: uses deprecated eclass(es): [ python (migrate to python-r1 / python-single-r1 / python-any-r1) ] + +sys-libs/libchipcard + DeprecatedEAPI: version 5.0.2: uses deprecated EAPI: 2 + +sys-libs/libcxx + WhitespaceFound: version 0.0_p20130725: ebuild has leading whitespace on line 113 + WhitespaceFound: version 0.0_p20131222: ebuild has leading whitespace on line 114 + WhitespaceFound: version 0.0_p20140322: ebuild has leading whitespace on line 114 + WhitespaceFound: version 3.6.0: ebuild has leading whitespace on line 115 + WhitespaceFound: version 3.6.1: ebuild has leading whitespace on line 115 + WhitespaceFound: version 3.6.2: ebuild has leading whitespace on line 115 + WhitespaceFound: version 3.7.0: ebuild has leading whitespace on line 115 + WhitespaceFound: version 9999: ebuild has leading whitespace on line 115 + ExecutableFile: "files/prepare_snapshot.sh" has unnecessary executable bit + +sys-libs/libcxxrt + DeprecatedEclass: version 9999: uses deprecated eclass(es): [ git-2 (migrate to git-r3) ] + ExecutableFile: "files/prepare_snapshot.sh" has unnecessary executable bit -sci-biology/iedera - DeprecatedEAPI: version 1.04: uses deprecated EAPI: 2 +sys-libs/libfreevec + DeprecatedEAPI: version 1.0.4: uses deprecated EAPI: 0 -sci-biology/infernal - DeprecatedEAPI: version 1.0.2-r1: uses deprecated EAPI: 4 +sys-libs/libhugetlbfs + DeprecatedEAPI: version 2.18: uses deprecated EAPI: 4 + DeprecatedEAPI: version 2.19: uses deprecated EAPI: 4 -sci-biology/iqpnni - DeprecatedEAPI: version 3.2: uses deprecated EAPI: 0 - DeprecatedEAPI: version 3.3.1: uses deprecated EAPI: 0 - DeprecatedEAPI: version 3.3.2: uses deprecated EAPI: 4 +sys-libs/libieee1284 + DeprecatedEclass: version 0.2.11-r3: uses deprecated eclass(es): [ python (migrate to python-r1 / python-single-r1 / python-any-r1) ] + DeprecatedEAPI: version 0.2.11-r3: uses deprecated EAPI: 4 -sci-biology/kalign - DeprecatedEAPI: version 2.03: uses deprecated EAPI: 0 - DeprecatedEAPI: version 2.03-r1: uses deprecated EAPI: 4 +sys-libs/libixp + DeprecatedEAPI: version 0.5_p20110208-r3: uses deprecated EAPI: 4 -sci-biology/lagan - DeprecatedEAPI: version 2.0-r1: uses deprecated EAPI: 2 - DeprecatedEAPI: version 2.0-r2: uses deprecated EAPI: 2 +sys-libs/libnih + DeprecatedEAPI: version 1.0.3-r3: uses deprecated EAPI: 4 -sci-biology/last - DeprecatedEAPI: version 230: uses deprecated EAPI: 4 +sys-libs/libraw1394 + DeprecatedEAPI: version 2.0.8: uses deprecated EAPI: 4 + DeprecatedEAPI: version 2.1.0-r1: uses deprecated EAPI: 4 + DeprecatedEAPI: version 2.1.1: uses deprecated EAPI: 4 -sci-biology/mammoth - MissingChksum: version 1.0-r1: "mammoth-1.0-src.tgz" missing required chksums: sha512, whirlpool; has chksums: sha256, size +sys-libs/librtas + DeprecatedEAPI: version 1.3.6: uses deprecated EAPI: 4 + DeprecatedEAPI: version 1.3.8: uses deprecated EAPI: 4 -sci-biology/maq - DeprecatedEAPI: version 0.7.1: uses deprecated EAPI: 0 - DeprecatedEAPI: version 0.7.1-r1: uses deprecated EAPI: 4 +sys-libs/libseccomp + DeprecatedEAPI: version 2.1.1: uses deprecated EAPI: 4 -sci-biology/mauve - DeprecatedEAPI: version 9999: uses deprecated EAPI: 2 +sys-libs/libsepol + DeprecatedEAPI: version 2.2: uses deprecated EAPI: 4 + DeprecatedEAPI: version 2.3: uses deprecated EAPI: 4 -sci-biology/mauvealigner - DeprecatedEAPI: version 9999: uses deprecated EAPI: 2 +sys-libs/libservicelog + DeprecatedEAPI: version 1.0.1: uses deprecated EAPI: 0 + DeprecatedEAPI: version 1.1.11: uses deprecated EAPI: 0 -sci-biology/mcl - DeprecatedEAPI: version 08.312: uses deprecated EAPI: 4 - DeprecatedEAPI: version 12.135: uses deprecated EAPI: 4 +sys-libs/libspe2 + DeprecatedEAPI: version 2.2.80_p95-r1: uses deprecated EAPI: 0 + DeprecatedEAPI: version 2.3.0_p135: uses deprecated EAPI: 0 -sci-biology/meme - DeprecatedEclass: version 4.8.1-r2: uses deprecated eclass(es): [ python (migrate to python-r1 / python-single-r1 / python-any-r1) ] - DeprecatedEAPI: version 4.8.1-r2: uses deprecated EAPI: 4 +sys-libs/libstatgrab + DeprecatedEAPI: version 0.17: uses deprecated EAPI: 4 -sci-biology/mosaik - DeprecatedEAPI: version 1.0.1367: uses deprecated EAPI: 2 - DeprecatedEAPI: version 1.0.1388: uses deprecated EAPI: 2 +sys-libs/libstdc++-v3 + DeprecatedEAPI: version 3.3.6: uses deprecated EAPI: 0 + DeprecatedEAPI: version 3.3.6-r1: uses deprecated EAPI: 0 -sci-biology/mrbayes - DeprecatedEAPI: version 3.1.2-r1: uses deprecated EAPI: 4 +sys-libs/libstdc++-v3-bin + DeprecatedEAPI: version 3.3.6: uses deprecated EAPI: 0 -sci-biology/mummer - DeprecatedEAPI: version 3.20: uses deprecated EAPI: 0 - DeprecatedEAPI: version 3.21: uses deprecated EAPI: 0 - DeprecatedEAPI: version 3.22-r1: uses deprecated EAPI: 3 +sys-libs/libtermcap-compat + DeprecatedEAPI: version 2.0.8-r2: uses deprecated EAPI: 0 + DeprecatedEAPI: version 2.0.8-r3: uses deprecated EAPI: 4 -sci-biology/newick-utils - DeprecatedEAPI: version 1.3.0: uses deprecated EAPI: 2 - DeprecatedEAPI: version 1.5.0: uses deprecated EAPI: 2 +sys-libs/libunwind + DeprecatedEAPI: version 0.99-r1: uses deprecated EAPI: 4 + DeprecatedEAPI: version 1.0.1: uses deprecated EAPI: 4 + DeprecatedEAPI: version 1.0.1-r1: uses deprecated EAPI: 4 -sci-biology/njplot - DeprecatedEAPI: version 2.3: uses deprecated EAPI: 2 +sys-libs/libutempter + DeprecatedEAPI: version 1.1.5: uses deprecated EAPI: 0 + DeprecatedEAPI: version 1.1.5-r1: uses deprecated EAPI: 4 + DeprecatedEAPI: version 1.1.6: uses deprecated EAPI: 4 + DeprecatedEAPI: version 1.1.6-r1: uses deprecated EAPI: 4 + DeprecatedEAPI: version 1.1.6-r2: uses deprecated EAPI: 4 -sci-biology/pals - DeprecatedEAPI: version 1.0: uses deprecated EAPI: 2 +sys-libs/libvpd + DeprecatedEAPI: version 2.1.3: uses deprecated EAPI: 4 -sci-biology/phrap - MissingChksum: version 1.080812-r1: "phrap-1.080812-distrib.tar.gz" missing required chksums: sha512, whirlpool; has chksums: sha256, size +sys-libs/libxcrypt + DeprecatedEAPI: version 2.0: uses deprecated EAPI: 0 -sci-biology/phred - DeprecatedEAPI: version 071220: uses deprecated EAPI: 0 - MissingChksum: version 071220: "phred-dist-071220.b-acd.tar.gz" missing required chksums: sha512, whirlpool; has chksums: sha256, size +sys-libs/lrmi + DeprecatedEAPI: version 0.10-r1: uses deprecated EAPI: 0 -sci-biology/phyml - DeprecatedEAPI: version 2.4.5-r2: uses deprecated EAPI: 2 +sys-libs/lwp + DeprecatedEAPI: version 2.2: uses deprecated EAPI: 0 + DeprecatedEAPI: version 2.5: uses deprecated EAPI: 0 + DeprecatedEAPI: version 2.6: uses deprecated EAPI: 4 -sci-biology/piler - DeprecatedEAPI: version 1.0: uses deprecated EAPI: 2 +sys-libs/mars + DeprecatedEAPI: version 1.0.1: uses deprecated EAPI: 0 -sci-biology/pilercr - DeprecatedEAPI: version 1.0: uses deprecated EAPI: 4 +sys-libs/ncurses + DeprecatedEAPI: version 5.9-r3: uses deprecated EAPI: 4 + MetadataError: version 5.9-r4: attr(rdepends): blocks itself + DeprecatedEAPI: version 5.9-r4: uses deprecated EAPI: 4 + DoubleEmptyLine: version 5.9-r101: ebuild has unneeded empty line 172 -sci-biology/plink - DeprecatedEAPI: version 1.07-r1: uses deprecated EAPI: 4 - -sci-biology/prank - DeprecatedEAPI: version 100701: uses deprecated EAPI: 4 - DeprecatedEAPI: version 111130: uses deprecated EAPI: 4 - DeprecatedEAPI: version 140603: uses deprecated EAPI: 4 - -sci-biology/prints - DeprecatedEAPI: version 39.0: uses deprecated EAPI: 0 - -sci-biology/prodigal - DeprecatedEAPI: version 2.50: uses deprecated EAPI: 2 - DeprecatedEAPI: version 2.60: uses deprecated EAPI: 2 - -sci-biology/prosite - DeprecatedEAPI: version 19.36: uses deprecated EAPI: 0 - DeprecatedEAPI: version 20.36: uses deprecated EAPI: 0 - DeprecatedEAPI: version 20.52: uses deprecated EAPI: 0 - DeprecatedEAPI: version 20.72: uses deprecated EAPI: 0 - -sci-biology/psipred - NonExistentDeps: version 3.1: depset rdepends: nonexistent atoms [ sci-biology/ncbi-tools++ ] - DeprecatedEAPI: version 3.1: uses deprecated EAPI: 3 - NonExistentDeps: version 3.2: depset rdepends: nonexistent atoms [ sci-biology/ncbi-tools++ ] - DeprecatedEAPI: version 3.2: uses deprecated EAPI: 3 - NonExistentDeps: version 3.2.1: depset rdepends: nonexistent atoms [ sci-biology/ncbi-tools++ ] - DeprecatedEAPI: version 3.2.1: uses deprecated EAPI: 4 - NonExistentDeps: version 3.3: depset rdepends: nonexistent atoms [ sci-biology/ncbi-tools++ ] - DeprecatedEAPI: version 3.3: uses deprecated EAPI: 4 - NonExistentDeps: version 3.4: depset rdepends: nonexistent atoms [ sci-biology/ncbi-tools++ ] - NonExistentDeps: version 3.5: depset rdepends: nonexistent atoms [ sci-biology/ncbi-tools++ ] - -sci-biology/qrna - DeprecatedEAPI: version 2.0.3c-r1: uses deprecated EAPI: 4 - -sci-biology/recon - DeprecatedEAPI: version 1.06-r1: uses deprecated EAPI: 4 - DeprecatedEAPI: version 1.06-r2: uses deprecated EAPI: 4 - -sci-biology/rmblast - SizeViolation: "files/rmblast-1.2-gcc47.patch" exceeds 20k in size; 31795 bytes total - -sci-biology/rnaview - DeprecatedEAPI: version 20040713: uses deprecated EAPI: 0 - DeprecatedEAPI: version 20040713-r2: uses deprecated EAPI: 2 - DeprecatedEAPI: version 20040713-r3: uses deprecated EAPI: 4 - -sci-biology/samtools - DeprecatedEAPI: version 0.1.12: uses deprecated EAPI: 2 - -sci-biology/shrimp - DeprecatedEAPI: version 2.0.1: uses deprecated EAPI: 4 - -sci-biology/sim4 - DeprecatedEAPI: version 20030921: uses deprecated EAPI: 0 - DeprecatedEAPI: version 20030921-r1: uses deprecated EAPI: 0 - -sci-biology/snpfile - DeprecatedEAPI: version 2.0.1: uses deprecated EAPI: 2 - DeprecatedEAPI: version 2.0.1-r1: uses deprecated EAPI: 4 - -sci-biology/tophat - DeprecatedEAPI: version 1.0.12: uses deprecated EAPI: 2 - DeprecatedEAPI: version 1.4.1: uses deprecated EAPI: 4 +sys-libs/newlib + DeprecatedEAPI: version 1.18.0: uses deprecated EAPI: 0 + DeprecatedEAPI: version 1.19.0: uses deprecated EAPI: 0 + DeprecatedEAPI: version 1.20.0: uses deprecated EAPI: 4 DeprecatedEAPI: version 2.0.0: uses deprecated EAPI: 4 - DeprecatedEAPI: version 2.0.2: uses deprecated EAPI: 4 - -sci-biology/transfac - DeprecatedEAPI: version 3.2: uses deprecated EAPI: 0 - -sci-biology/tree-puzzle - DeprecatedEAPI: version 5.2: uses deprecated EAPI: 4 - -sci-biology/treeviewx - DeprecatedEAPI: version 0.5.1-r2: uses deprecated EAPI: 2 - -sci-biology/trf - DeprecatedEAPI: version 4.04: uses deprecated EAPI: 4 - -sci-biology/trnascan-se - DeprecatedEAPI: version 1.23-r2: uses deprecated EAPI: 3 + DeprecatedEAPI: version 2.1.0: uses deprecated EAPI: 4 + DeprecatedEAPI: version 2.2.0: uses deprecated EAPI: 4 + DeprecatedEAPI: version 2.2.0.20150423: uses deprecated EAPI: 4 + DeprecatedEAPI: version 9999: uses deprecated EAPI: 4 + DroppedKeywordWarning: version 2.2.0.20150423: keywords dropped: arm, hppa, m68k, mips, ppc, ppc64, sh, sparc, x86 + +sys-libs/nss-db + DeprecatedEAPI: version 2.2.3_pre1-r2: uses deprecated EAPI: 0 + DeprecatedEAPI: version 2.2.3_pre1-r3: uses deprecated EAPI: 0 + DeprecatedEAPI: version 2.2.3_pre1-r4: uses deprecated EAPI: 0 + +sys-libs/openhpi + DeprecatedEAPI: version 2.12.0: uses deprecated EAPI: 0 + DeprecatedEAPI: version 3.0.0: uses deprecated EAPI: 4 + +sys-libs/openipmi + DeprecatedEAPI: version 1.3.18: uses deprecated EAPI: 0 + DeprecatedEAPI: version 1.4.12: uses deprecated EAPI: 0 + DeprecatedEAPI: version 1.4.14: uses deprecated EAPI: 0 + DeprecatedEAPI: version 1.4.28: uses deprecated EAPI: 0 + DeprecatedEAPI: version 2.0.11: uses deprecated EAPI: 0 + DeprecatedEclass: version 2.0.16: uses deprecated eclass(es): [ python (migrate to python-r1 / python-single-r1 / python-any-r1) ] + DeprecatedEAPI: version 2.0.16: uses deprecated EAPI: 0 + DeprecatedEclass: version 2.0.16-r1: uses deprecated eclass(es): [ python (migrate to python-r1 / python-single-r1 / python-any-r1) ] + DeprecatedEAPI: version 2.0.16-r1: uses deprecated EAPI: 0 + DeprecatedEclass: version 2.0.18: uses deprecated eclass(es): [ python (migrate to python-r1 / python-single-r1 / python-any-r1) ] + DeprecatedEAPI: version 2.0.18: uses deprecated EAPI: 0 + DroppedKeywordWarning: version 1.4.12: keywords dropped: amd64 + +sys-libs/pam + NonExistentDeps: version 1.1.5: depset depends: nonexistent atoms [ <sys-libs/glibc-2.14 ] + NonExistentDeps: version 1.1.5: depset rdepends: nonexistent atoms [ <sys-libs/glibc-2.14 ] + DeprecatedEAPI: version 1.1.5: uses deprecated EAPI: 4 + NonExistentDeps: version 1.1.6-r2: depset depends: nonexistent atoms [ <sys-libs/glibc-2.14 ] + NonExistentDeps: version 1.1.6-r2: depset rdepends: nonexistent atoms [ <sys-libs/glibc-2.14 ] + NonExistentDeps: version 1.1.8: depset depends: nonexistent atoms [ <sys-libs/glibc-2.14 ] + NonExistentDeps: version 1.1.8: depset rdepends: nonexistent atoms [ <sys-libs/glibc-2.14 ] + NonExistentDeps: version 1.1.8-r1: depset depends: nonexistent atoms [ <sys-libs/glibc-2.14 ] + NonExistentDeps: version 1.1.8-r1: depset rdepends: nonexistent atoms [ <sys-libs/glibc-2.14 ] + NonExistentDeps: version 1.1.8-r2: depset depends: nonexistent atoms [ <sys-libs/glibc-2.14 ] + NonExistentDeps: version 1.1.8-r2: depset rdepends: nonexistent atoms [ <sys-libs/glibc-2.14 ] + +sys-libs/pwdb + DeprecatedEAPI: version 0.62: uses deprecated EAPI: 4 + +sys-libs/readline + DeprecatedEAPI: version 6.2_p5-r1: uses deprecated EAPI: 4 + DeprecatedEAPI: version 6.3_p8-r1: uses deprecated EAPI: 4 + DeprecatedEAPI: version 6.3_p8-r2: uses deprecated EAPI: 4 + DroppedKeywordWarning: version 7.0_beta: keywords dropped: alpha, amd64, arm, arm64, hppa, ia64, m68k, mips, ppc, ppc64, s390, sh, sparc, x86 + +sys-libs/rvm + DeprecatedEAPI: version 1.12: uses deprecated EAPI: 0 + DeprecatedEAPI: version 1.16: uses deprecated EAPI: 0 + DeprecatedEAPI: version 1.17: uses deprecated EAPI: 2 -sci-biology/uchime - DeprecatedEAPI: version 4.2.40: uses deprecated EAPI: 4 +sys-libs/slang + DeprecatedEAPI: version 2.2.4: uses deprecated EAPI: 4 -sci-biology/unafold - DeprecatedEAPI: version 3.8: uses deprecated EAPI: 3 +sys-libs/suacomp + DeprecatedEAPI: version 0.6.13: uses deprecated EAPI: 3 + DeprecatedEAPI: version 0.6.14: uses deprecated EAPI: 3 + DeprecatedEclass: version 9999: uses deprecated eclass(es): [ git-2 (migrate to git-r3) ] + DeprecatedEAPI: version 9999: uses deprecated EAPI: 4 -sci-biology/velvet - DeprecatedEAPI: version 1.0.18-r1: uses deprecated EAPI: 4 +sys-libs/system-config-base + DeprecatedEAPI: version 1-r1: uses deprecated EAPI: 0 -sci-biology/wgs-assembler - DeprecatedEAPI: version 5.4: uses deprecated EAPI: 2 - DeprecatedEAPI: version 6.1: uses deprecated EAPI: 2 - DeprecatedEAPI: version 7.0: uses deprecated EAPI: 2 - DeprecatedEclass: version 7.0-r1: uses deprecated eclass(es): [ python (migrate to python-r1 / python-single-r1 / python-any-r1) ] - DeprecatedEAPI: version 7.0-r1: uses deprecated EAPI: 4 +sys-libs/timezone-data + DeprecatedEAPI: version 2015e: uses deprecated EAPI: 4 + DeprecatedEAPI: version 2015f: uses deprecated EAPI: 4 + DeprecatedEAPI: version 2015g: uses deprecated EAPI: 4 -sci-biology/wise - SizeViolation: "files/wise-2.4.0_alpha-cflags.patch" exceeds 20k in size; 27241 bytes total +sys-libs/uclibc + DeprecatedEAPI: version 0.9.33.2-r15: uses deprecated EAPI: 0 + DeprecatedEclass: version 0.9.33.9999: uses deprecated eclass(es): [ git-2 (migrate to git-r3) ] + DeprecatedEAPI: version 0.9.33.9999: uses deprecated EAPI: 0 + DeprecatedEclass: version 9999: uses deprecated eclass(es): [ git-2 (migrate to git-r3) ] + DeprecatedEAPI: version 9999: uses deprecated EAPI: 0 -sci-biology/yass - DeprecatedEAPI: version 1.14: uses deprecated EAPI: 2 - DeprecatedEAPI: version 1.14-r1: uses deprecated EAPI: 2 +sys-libs/zlib + DeprecatedEAPI: version 1.2.8-r1: uses deprecated EAPI: 4 WARNING pkgcore: metadata.dtd cannot be opened from : /home/mgorny/repos/gentoo/metadata/dtd/metadata.dtd, will : refetch |