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author | Andrey Kislyuk <weaver@gentoo.org> | 2012-02-27 15:55:41 +0000 |
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committer | Andrey Kislyuk <weaver@gentoo.org> | 2012-02-27 15:55:41 +0000 |
commit | 14f30498ecaa8482c1767255106d9e8dfb316c80 (patch) | |
tree | e8fe4d0bb0248779cf6fc084c6e5f3f5a92ccc14 /sci-biology/GBrowse/GBrowse-2.48.ebuild | |
parent | Marking Mail-DKIM-0.390.0 ppc for bug 400167 (diff) | |
download | gentoo-2-14f30498ecaa8482c1767255106d9e8dfb316c80.tar.gz gentoo-2-14f30498ecaa8482c1767255106d9e8dfb316c80.tar.bz2 gentoo-2-14f30498ecaa8482c1767255106d9e8dfb316c80.zip |
Version bump
(Portage version: 2.2.0_alpha74/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology/GBrowse/GBrowse-2.48.ebuild')
-rw-r--r-- | sci-biology/GBrowse/GBrowse-2.48.ebuild | 72 |
1 files changed, 72 insertions, 0 deletions
diff --git a/sci-biology/GBrowse/GBrowse-2.48.ebuild b/sci-biology/GBrowse/GBrowse-2.48.ebuild new file mode 100644 index 000000000000..765512609e5a --- /dev/null +++ b/sci-biology/GBrowse/GBrowse-2.48.ebuild @@ -0,0 +1,72 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/GBrowse/GBrowse-2.48.ebuild,v 1.1 2012/02/27 15:55:41 weaver Exp $ + +EAPI=4 + +MODULE_AUTHOR=LDS +inherit perl-module webapp + +DESCRIPTION="Generic Model Organism Database Project - The Generic Genome Browser" +HOMEPAGE="http://gmod.org/wiki/GBrowse" +KEYWORDS="~amd64 ~x86" +IUSE="-minimal mysql postgres +sqlite" + +SLOT="0" +WEBAPP_MANUAL_SLOT="yes" + +CDEPEND="!<sci-biology/GBrowse-2.44-r1 + >=sci-biology/bioperl-1.6.9 + >=dev-perl/Bio-Graphics-2.09 + >=dev-perl/GD-2.07 + >=dev-perl/CGI-Session-4.02 + dev-perl/IO-String + dev-perl/JSON + dev-perl/libwww-perl + dev-perl/Statistics-Descriptive + !minimal? ( + dev-perl/Bio-Das + >=dev-perl/Bio-SamTools-1.20 + dev-perl/Crypt-SSLeay + dev-perl/DB_File-Lock + dev-perl/DBI + mysql? ( dev-perl/DBD-mysql ) + postgres? ( dev-perl/DBD-Pg ) + sqlite? ( dev-perl/DBD-SQLite ) + dev-perl/FCGI + dev-perl/File-NFSLock + dev-perl/GD-SVG + dev-perl/Net-OpenID-Consumer + dev-perl/Net-SMTP-SSL + )" +# >=dev-perl/Bio-DB-BigFile-1.00 - requires jklib to compile +DEPEND="virtual/perl-Module-Build + dev-perl/Capture-Tiny + ${CDEPEND}" +RDEPEND="${CDEPEND}" + +PATCHES=( "${FILESDIR}"/GBrowseInstall.pm-2.39.patch ) + +src_configure() { + webapp_src_preinst + +# myconf="--install_base=${D}/usr" or "--install_base=/opt/gbrowse" + myconf="--conf=/etc/gbrowse2" + myconf="${myconf} --htdocs=${MY_HTDOCSDIR}" + myconf="${myconf} --cgibin=${MY_CGIBINDIR}" + myconf="${myconf} --tmp=/var/tmp/gbrowse2" + myconf="${myconf} --persistent=/var/db/gbrowse2" + myconf="${myconf} --databases=/var/db/gbrowse2/databases" + myconf="${myconf} --installconf=no" + myconf="${myconf} --installetc=no" + perl-module_src_configure +} + +src_install() { + dodir /var/tmp/gbrowse2 + dodir /var/db/gbrowse2/sessions + dodir /var/db/gbrowse2/userdata + webapp_serverowned -R /var/tmp/gbrowse2 /var/db/gbrowse2 + perl-module_src_install + webapp_src_install +} |