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| author |   Justin Lecher <jlec@gentoo.org> | 2013-08-11 14:55:23 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2013-08-11 14:55:23 +0000 |
| commit | 572fb74e26fba60b7bd4af3b408ce30f65302ac6 (patch) | |
| tree | a7938d466972793ee4987d5068d007d5a62e8ee4 /sci-biology/abyss/files | |
| parent | fix doc install dir wrt #480518 (diff) | |
| download | gentoo-2-572fb74e26fba60b7bd4af3b408ce30f65302ac6.tar.gz gentoo-2-572fb74e26fba60b7bd4af3b408ce30f65302ac6.tar.bz2 gentoo-2-572fb74e26fba60b7bd4af3b408ce30f65302ac6.zip | |
sci-biology/abyss: Version BUmp, respect AR, #477580
(Portage version: 2.2.0_alpha196/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Diffstat (limited to 'sci-biology/abyss/files')
| -rw-r--r-- | sci-biology/abyss/files/abyss-1.3.3-ac_prog_ar.patch | 18 | ||||
| -rw-r--r-- | sci-biology/abyss/files/abyss-1.3.6-ac_prog_ar.patch | 18 | ||||
| -rw-r--r-- | sci-biology/abyss/files/abyss-1.3.6-gcc-4.7.patch | 15 |
3 files changed, 51 insertions, 0 deletions
diff --git a/sci-biology/abyss/files/abyss-1.3.3-ac_prog_ar.patch b/sci-biology/abyss/files/abyss-1.3.3-ac_prog_ar.patch new file mode 100644 index 000000000000..300868f52b76 --- /dev/null +++ b/sci-biology/abyss/files/abyss-1.3.3-ac_prog_ar.patch @@ -0,0 +1,18 @@ + configure.ac | 4 ++++ + 1 file changed, 4 insertions(+) + +diff --git a/configure.ac b/configure.ac +index 5c6cb92..b99bedd 100644 +--- a/configure.ac ++++ b/configure.ac +@@ -12,6 +12,10 @@ AC_PROG_CPP + AC_PROG_CXX + AC_PROG_INSTALL + AC_PROG_RANLIB ++AN_MAKEVAR([AR], [AC_PROG_AR]) ++AN_PROGRAM([ar], [AC_PROG_AR]) ++AC_DEFUN([AC_PROG_AR], [AC_CHECK_TOOL(AR, ar, :)]) ++AC_PROG_AR + + # Checks for header files. + AC_CHECK_HEADERS([dlfcn.h fcntl.h float.h limits.h \ diff --git a/sci-biology/abyss/files/abyss-1.3.6-ac_prog_ar.patch b/sci-biology/abyss/files/abyss-1.3.6-ac_prog_ar.patch new file mode 100644 index 000000000000..158e9b1262e4 --- /dev/null +++ b/sci-biology/abyss/files/abyss-1.3.6-ac_prog_ar.patch @@ -0,0 +1,18 @@ + configure.ac | 4 ++++ + 1 file changed, 4 insertions(+) + +diff --git a/configure.ac b/configure.ac +index 9d4bb66..aa94364 100644 +--- a/configure.ac ++++ b/configure.ac +@@ -12,6 +12,10 @@ AC_PROG_CPP + AC_PROG_CXX + AC_PROG_INSTALL + AC_PROG_RANLIB ++AN_MAKEVAR([AR], [AC_PROG_AR]) ++AN_PROGRAM([ar], [AC_PROG_AR]) ++AC_DEFUN([AC_PROG_AR], [AC_CHECK_TOOL(AR, ar, :)]) ++AC_PROG_AR + AC_CHECK_TOOL(GHC, ghc) + AM_CONDITIONAL([HAVE_GHC], [test "$GHC"]) + diff --git a/sci-biology/abyss/files/abyss-1.3.6-gcc-4.7.patch b/sci-biology/abyss/files/abyss-1.3.6-gcc-4.7.patch new file mode 100644 index 000000000000..c2cc35c31d98 --- /dev/null +++ b/sci-biology/abyss/files/abyss-1.3.6-gcc-4.7.patch @@ -0,0 +1,15 @@ + ParseAligns/abyss-fixmate.cc | 1 + + 1 files changed, 1 insertions(+), 0 deletions(-) + +diff --git a/ParseAligns/abyss-fixmate.cc b/ParseAligns/abyss-fixmate.cc +index 1a169cf..36cc05b 100644 +--- a/ParseAligns/abyss-fixmate.cc ++++ b/ParseAligns/abyss-fixmate.cc +@@ -16,6 +16,7 @@ + #include <iterator> + #include <sstream> + #include <string> ++#include <unistd.h> + + using namespace std; + |