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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2011-10-09 04:01:53 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2011-10-09 04:01:53 +0000 |
| commit | a82716793d9ead50278b202d4070ff55bc519698 (patch) | |
| tree | 1e5dea4f1484491e6950949bfa57ec3b082c6f0e /sci-biology/bedtools | |
| parent | Fix build failure on amd64. Thanks to Claudio Calvelli for the patch. Bug 385... (diff) | |
| download | gentoo-2-a82716793d9ead50278b202d4070ff55bc519698.tar.gz gentoo-2-a82716793d9ead50278b202d4070ff55bc519698.tar.bz2 gentoo-2-a82716793d9ead50278b202d4070ff55bc519698.zip | |
Import from Science overlay and rewrite
(Portage version: 2.2.0_alpha45/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology/bedtools')
| -rw-r--r-- | sci-biology/bedtools/ChangeLog | 13 | ||||
| -rw-r--r-- | sci-biology/bedtools/bedtools-2.13.3.ebuild | 32 | ||||
| -rw-r--r-- | sci-biology/bedtools/metadata.xml | 14 |
3 files changed, 59 insertions, 0 deletions
diff --git a/sci-biology/bedtools/ChangeLog b/sci-biology/bedtools/ChangeLog new file mode 100644 index 000000000000..dbf5b6263ac9 --- /dev/null +++ b/sci-biology/bedtools/ChangeLog @@ -0,0 +1,13 @@ +# ChangeLog for sci-biology/bedtools +# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bedtools/ChangeLog,v 1.1 2011/10/09 04:01:53 weaver Exp $ + +*bedtools-2.13.3 (09 Oct 2011) + + 09 Oct 2011; Andrey Kislyuk <weaver@gentoo.org> +bedtools-2.13.3.ebuild, + +metadata.xml: + Import from Science overlay and rewrite + + 24 Jun 2011; Justin Lecher <jlec@gentoo.org> bedtools-2.10.1.ebuild: + SOme ebuild cleaning + diff --git a/sci-biology/bedtools/bedtools-2.13.3.ebuild b/sci-biology/bedtools/bedtools-2.13.3.ebuild new file mode 100644 index 000000000000..c635c3de7f27 --- /dev/null +++ b/sci-biology/bedtools/bedtools-2.13.3.ebuild @@ -0,0 +1,32 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bedtools/bedtools-2.13.3.ebuild,v 1.1 2011/10/09 04:01:53 weaver Exp $ + +EAPI=4 + +inherit flag-o-matic + +DESCRIPTION="Tools for manipulation and analysis of BED, GFF/GTF, VCF, and SAM/BAM file formats" +HOMEPAGE="http://code.google.com/p/bedtools/" +SRC_URI="http://bedtools.googlecode.com/files/BEDTools.v${PV}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~x86 ~amd64" +IUSE="" + +S="${WORKDIR}/BEDTools-Version-${PV}" + +src_prepare() { + filter-ldflags -Wl,--as-needed + sed -i -e '1 a SHELL := /bin/bash -e' \ + -e '/export CXXFLAGS/ d' \ + -e '/export CXX/ d' \ + Makefile || die +} + +src_install(){ + dobin bin/* + dodoc README* RELEASE_HISTORY + newbin bin/overlap bt_ovelap +} diff --git a/sci-biology/bedtools/metadata.xml b/sci-biology/bedtools/metadata.xml new file mode 100644 index 000000000000..dffdf8b00408 --- /dev/null +++ b/sci-biology/bedtools/metadata.xml @@ -0,0 +1,14 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <maintainer> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <longdescription>BEDTools: a flexible suite of utilities for comparing genomic features.</longdescription> +</pkgmetadata> |