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| author |   Olivier Fisette <ribosome@gentoo.org> | 2008-08-27 14:52:03 +0000 |
|---|---|---|
| committer | Olivier Fisette <ribosome@gentoo.org> | 2008-08-27 14:52:03 +0000 |
| commit | edd99c924fbcde645d4fbdeea1bc27370efa97dc (patch) | |
| tree | e3f9b0ba9004360ddd1cace4f7cd2d733e18d837 /sci-biology/cutg | |
| parent | Version bump, thanks to notification from upstream (diff) | |
| download | gentoo-2-edd99c924fbcde645d4fbdeea1bc27370efa97dc.tar.gz gentoo-2-edd99c924fbcde645d4fbdeea1bc27370efa97dc.tar.bz2 gentoo-2-edd99c924fbcde645d4fbdeea1bc27370efa97dc.zip | |
New upstream version.
(Portage version: 2.1.4.4)
Diffstat (limited to 'sci-biology/cutg')
| -rw-r--r-- | sci-biology/cutg/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/cutg/cutg-160.ebuild | 45 |
2 files changed, 52 insertions, 2 deletions
diff --git a/sci-biology/cutg/ChangeLog b/sci-biology/cutg/ChangeLog index 241701414cc3..c1b7c6c604f0 100644 --- a/sci-biology/cutg/ChangeLog +++ b/sci-biology/cutg/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/cutg -# Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.49 2006/12/10 18:55:06 ribosome Exp $ +# Copyright 2000-2008 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.50 2008/08/27 14:52:03 ribosome Exp $ + +*cutg-160 (27 Aug 2008) + + 27 Aug 2008; Olivier Fisette <ribosome@gentoo.org> +cutg-160.ebuild: + New upstream version. 10 Dec 2006; Olivier Fisette <ribosome@gentoo.org> -cutg-150.ebuild: Pruned old version. diff --git a/sci-biology/cutg/cutg-160.ebuild b/sci-biology/cutg/cutg-160.ebuild new file mode 100644 index 000000000000..14b1de365d5d --- /dev/null +++ b/sci-biology/cutg/cutg-160.ebuild @@ -0,0 +1,45 @@ +# Copyright 1999-2008 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-160.ebuild,v 1.1 2008/08/27 14:52:03 ribosome Exp $ + +DESCRIPTION="Codon usage tables calculated from GenBank" +LICENSE="public-domain" +HOMEPAGE="http://www.kazusa.or.jp/codon/" +SRC_URI="mirror://gentoo/${P}.tar.bz2" + +SLOT="0" +# Minimal build keeps only the indexed files (if applicable) and the +# documentation. The non-indexed database is not installed. +IUSE="emboss minimal" +KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86" + +DEPEND="emboss? ( sci-biology/emboss )" + +src_compile() { + if use emboss; then + mkdir CODONS + echo + einfo "Indexing CUTG for usage with EMBOSS." + EMBOSS_DATA="." cutgextract -auto -directory "${S}" || die \ + "Indexing CUTG failed." + echo + fi +} + +src_install() { + if ! use minimal; then + mkdir -p "${D}"usr/share/${PN} + mv *.codon *.spsum "${D}"/usr/share/${PN} || die \ + "Installing raw CUTG database failed." + fi + dodoc README CODON_LABEL SPSUM_LABEL || die \ + "Failed to install documentation." + if use emboss; then + mkdir -p "${D}"/usr/share/EMBOSS/data/CODONS + cd CODONS + for file in *; do + mv ${file} "${D}"/usr/share/EMBOSS/data/CODONS || die \ + "Installing the EMBOSS-indexed database failed." + done + fi +} |