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authorJustin Lecher <jlec@gentoo.org>2011-03-09 13:09:22 +0000
committerJustin Lecher <jlec@gentoo.org>2011-03-09 13:09:22 +0000
commit6ac824edcb5c78492e08d260413ff65e351ae5db (patch)
tree5e93e9f9728c235a5eed23d64700d786768a04ee /sci-biology/emboss
parentCorrected mask entry (diff)
downloadgentoo-2-6ac824edcb5c78492e08d260413ff65e351ae5db.tar.gz
gentoo-2-6ac824edcb5c78492e08d260413ff65e351ae5db.tar.bz2
gentoo-2-6ac824edcb5c78492e08d260413ff65e351ae5db.zip
Bump to latest upstream patches
(Portage version: 2.2.0_alpha26/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology/emboss')
-rw-r--r--sci-biology/emboss/ChangeLog9
-rw-r--r--sci-biology/emboss/emboss-6.3.1_p4.ebuild (renamed from sci-biology/emboss/emboss-6.3.1.ebuild)13
-rw-r--r--sci-biology/emboss/files/6.3.1_p4-unbundle-libs.patch (renamed from sci-biology/emboss/files/6.3.1-unbundle-libs.patch)0
3 files changed, 17 insertions, 5 deletions
diff --git a/sci-biology/emboss/ChangeLog b/sci-biology/emboss/ChangeLog
index 3b0859c74147..8bbed2e361c4 100644
--- a/sci-biology/emboss/ChangeLog
+++ b/sci-biology/emboss/ChangeLog
@@ -1,6 +1,13 @@
# ChangeLog for sci-biology/emboss
# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/ChangeLog,v 1.59 2011/03/09 12:00:38 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/ChangeLog,v 1.60 2011/03/09 13:09:22 jlec Exp $
+
+*emboss-6.3.1_p4 (09 Mar 2011)
+
+ 09 Mar 2011; Justin Lecher <jlec@gentoo.org>
+ +files/6.3.1_p4-unbundle-libs.patch, -files/6.3.1-unbundle-libs.patch,
+ -emboss-6.3.1.ebuild, +emboss-6.3.1_p4.ebuild:
+ Bump to latest upstream patches
*emboss-6.3.1 (09 Mar 2011)
diff --git a/sci-biology/emboss/emboss-6.3.1.ebuild b/sci-biology/emboss/emboss-6.3.1_p4.ebuild
index e7f52c4dbb4e..40cd20b4ed8e 100644
--- a/sci-biology/emboss/emboss-6.3.1.ebuild
+++ b/sci-biology/emboss/emboss-6.3.1_p4.ebuild
@@ -1,16 +1,20 @@
# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/emboss-6.3.1.ebuild,v 1.1 2011/03/09 12:00:38 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/emboss-6.3.1_p4.ebuild,v 1.1 2011/03/09 13:09:22 jlec Exp $
EAPI="4"
inherit autotools eutils
+MY_PATCH="4"
+
DESCRIPTION="The European Molecular Biology Open Software Suite - A sequence analysis package"
HOMEPAGE="http://emboss.sourceforge.net/"
-SRC_URI="ftp://${PN}.open-bio.org/pub/EMBOSS/EMBOSS-${PV}.tar.gz"
-LICENSE="GPL-2 LGPL-2"
+SRC_URI="
+ ftp://${PN}.open-bio.org/pub/EMBOSS/EMBOSS-${PV/_p${MY_PATCH}}.tar.gz
+ ftp://${PN}.open-bio.org/pub/EMBOSS/fixes/patches/patch-1-${MY_PATCH}.gz -> ${P}.patch.gz"
+LICENSE="GPL-2 LGPL-2"
SLOT="0"
KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
IUSE="doc +largefile minimal mysql pdf png postgres static-libs X"
@@ -45,9 +49,10 @@ PDEPEND="
sci-biology/transfac
)"
-S="${WORKDIR}/EMBOSS-${PV}"
+S="${WORKDIR}/EMBOSS-${PV/_p${MY_PATCH}}"
src_prepare() {
+ epatch "${WORKDIR}"/${P}.patch
epatch \
"${FILESDIR}"/${PV}-unbundle-libs.patch
eautoreconf
diff --git a/sci-biology/emboss/files/6.3.1-unbundle-libs.patch b/sci-biology/emboss/files/6.3.1_p4-unbundle-libs.patch
index 5e463744a739..5e463744a739 100644
--- a/sci-biology/emboss/files/6.3.1-unbundle-libs.patch
+++ b/sci-biology/emboss/files/6.3.1_p4-unbundle-libs.patch