Fix overflows wrt bug 336604 and install path wrt bug 297536. Thanks to Diego for the reports.

(Portage version: 2.1.9/cvs/Linux x86_64)

1 files changed, 45 insertions, 0 deletions

diff --git a/sci-biology/eugene/eugene-3.6-r1.ebuild b/sci-biology/eugene/eugene-3.6-r1.ebuild
new file mode 100644
index 000000000000..96f148007bc5
--- /dev/null
+++ b/sci-biology/eugene/eugene-3.6-r1.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/eugene/eugene-3.6-r1.ebuild,v 1.1 2010/09/10 16:37:04 xarthisius Exp $
+
+EAPI=2
+
+inherit autotools eutils
+
+DESCRIPTION="Eukaryotic gene predictor"
+HOMEPAGE="http://www.inra.fr/mia/T/EuGene/"
+# self-signed https SRC_URI
+#SRC_URI="http://mulcyber.toulouse.inra.fr/gf/download/frsrelease/220/3675/${P}-1.tar.gz"
+SRC_URI="mirror://gentoo/${P}.tar.gz"
+
+LICENSE="Artistic"
+SLOT="0"
+IUSE="doc"
+KEYWORDS="~amd64 ~x86"
+
+RESTRICT="test"
+
+DEPEND="media-libs/gd[png]
+	media-libs/libpng
+	doc? ( dev-lang/tcl
+		dev-texlive/texlive-latex
+		dev-texlive/texlive-latexrecommended
+		dev-texlive/texlive-latexextra
+		)"
+RDEPEND="${DEPEND}"
+
+src_prepare() {
+	# https://mulcyber.toulouse.inra.fr/tracker/index.php?func=detail&aid=1170 
+	epatch "${FILESDIR}"/${P}-overflow.patch \
+		"${FILESDIR}"/${P}-plugins.patch
+	if ( ! use doc ); then
+		sed -i -e '/SUBDIRS/ s/doc//' \
+			-e '/INSTALL.*doc/ s/\(.*\)//' \
+			Makefile.am || die
+		eautoreconf
+	fi
+}
+
+src_install() {
+	emake DESTDIR="${D}" install || die
+}