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authorOlivier Fisette <ribosome@gentoo.org>2005-01-02 21:48:57 +0000
committerOlivier Fisette <ribosome@gentoo.org>2005-01-02 21:48:57 +0000
commit69bd262eb785775528d8bf5e0c96d3661764cb4e (patch)
treeea1e84b94e7d21c36a034fa956cec8ebb244df8a /sci-biology/rebase
parentChange encoding to UTF-8 for GLEP 31 compliance (Manifest recommit) (diff)
downloadgentoo-2-69bd262eb785775528d8bf5e0c96d3661764cb4e.tar.gz
gentoo-2-69bd262eb785775528d8bf5e0c96d3661764cb4e.tar.bz2
gentoo-2-69bd262eb785775528d8bf5e0c96d3661764cb4e.zip
New version: 501. Added 412 to x86.
Diffstat (limited to 'sci-biology/rebase')
-rw-r--r--sci-biology/rebase/ChangeLog8
-rw-r--r--sci-biology/rebase/Manifest4
-rw-r--r--sci-biology/rebase/files/digest-rebase-5011
-rw-r--r--sci-biology/rebase/rebase-412.ebuild4
-rw-r--r--sci-biology/rebase/rebase-501.ebuild35
5 files changed, 48 insertions, 4 deletions
diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
index ddc38272fe66..ba47b1a2b1ed 100644
--- a/sci-biology/rebase/ChangeLog
+++ b/sci-biology/rebase/ChangeLog
@@ -1,6 +1,12 @@
# ChangeLog for sci-biology/rebase
# Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.3 2005/01/02 01:55:00 j4rg0n Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.4 2005/01/02 21:48:57 ribosome Exp $
+
+*rebase-501 (02 Jan 2005)
+
+ 02 Jan 2005; Olivier Fisette <ribosome@gentoo.org> rebase-412.ebuild,
+ +rebase-501.ebuild:
+ New version: 501. Added 412 to x86.
01 Jan 2005; Lina Pezzella <j4rg0n@gentoo.org> rebase-412.ebuild:
Unstable ppc-macos.
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 2fe794ef812e..08eaf1b53dbc 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,6 +1,8 @@
+MD5 c607ca8b0a9ec16e3b78a4859b8f03da rebase-501.ebuild 1130
MD5 261266bba96211352b28cc691b83b628 rebase-411.ebuild 1118
MD5 73b78055b58c550aee80f88bef1ddca2 ChangeLog 1742
MD5 550f8d428f3e75690b43d32df6aa60cd metadata.xml 900
-MD5 c607ca8b0a9ec16e3b78a4859b8f03da rebase-412.ebuild 1130
+MD5 77d751dc2c87ed7c6f747ad1aaa09cb4 rebase-412.ebuild 1129
MD5 04a9c29643e242bfdb170ef425f2a76e files/digest-rebase-411 63
MD5 c4f5461dd83ed5a1176a07a0786a6af7 files/digest-rebase-412 63
+MD5 ad65c17b06a4725c0048159c32826e03 files/digest-rebase-501 63
diff --git a/sci-biology/rebase/files/digest-rebase-501 b/sci-biology/rebase/files/digest-rebase-501
new file mode 100644
index 000000000000..ada5b318eff5
--- /dev/null
+++ b/sci-biology/rebase/files/digest-rebase-501
@@ -0,0 +1 @@
+MD5 bd581befa07ca4d327e5ab094a5a95ad rebase-501.tar.bz2 177929
diff --git a/sci-biology/rebase/rebase-412.ebuild b/sci-biology/rebase/rebase-412.ebuild
index 1826b82065f2..a4dda83454fa 100644
--- a/sci-biology/rebase/rebase-412.ebuild
+++ b/sci-biology/rebase/rebase-412.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-412.ebuild,v 1.3 2005/01/02 15:23:10 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-412.ebuild,v 1.4 2005/01/02 21:48:57 ribosome Exp $
DESCRIPTION="A restriction enzyme database"
HOMEPAGE="http://rebase.neb.com"
@@ -8,7 +8,7 @@ SRC_URI="mirror://gentoo/${P}.tar.bz2"
LICENSE="public-domain"
SLOT="0"
-KEYWORDS="~x86 ~ppc ~amd64 ~ppc-macos"
+KEYWORDS="x86 ~ppc ~amd64 ~ppc-macos"
IUSE="no-emboss no-rawdb"
src_compile() {
diff --git a/sci-biology/rebase/rebase-501.ebuild b/sci-biology/rebase/rebase-501.ebuild
new file mode 100644
index 000000000000..4c2f5bf97a69
--- /dev/null
+++ b/sci-biology/rebase/rebase-501.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2005 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-501.ebuild,v 1.1 2005/01/02 21:48:57 ribosome Exp $
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+LICENSE="public-domain"
+
+SLOT="0"
+KEYWORDS="~x86 ~ppc ~amd64 ~ppc-macos"
+IUSE="no-emboss no-rawdb"
+
+src_compile() {
+ # Index the database for use with emboss if emboss is installed and
+ # the user did not explicitly request not to index the database.
+ if [ -e /usr/bin/rebaseextract ] && ! use no-emboss; then
+ einfo "Indexing ${PN} for usage with EMBOSS."
+ mkdir REBASE
+ EMBOSS_DATA=. rebaseextract -auto -infile withrefm.${PV} \
+ -protofile proto.${PV} || die "Indexing ${PN} failed."
+ fi
+}
+
+src_install() {
+ if ! use no-rawdb; then
+ insinto /usr/share/${PN}
+ doins withrefm.${PV} proto.${PV}
+ fi
+ newdoc REBASE.DOC README
+ if [ -e /usr/bin/rebaseextract ] && ! use no-emboss; then
+ insinto /usr/share/EMBOSS/data/REBASE
+ doins REBASE/{embossre.enz,embossre.ref,embossre.sup}
+ fi
+}