Moved from app-sci/seaview to sci-biology/seaview.

6 files changed, 93 insertions, 0 deletions

diff --git a/sci-biology/seaview/ChangeLog b/sci-biology/seaview/ChangeLog
new file mode 100644
index 000000000000..cdb3589b0b93
--- /dev/null
+++ b/sci-biology/seaview/ChangeLog
@@ -0,0 +1,35 @@
+# ChangeLog for app-sci/seaview
+# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v 1.1 2004/12/23 21:44:42 ribosome Exp $
+
+*seaview-1-r1 (23 Dec 2004)
+
+  23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+  +files/29seaview, +seaview-1-r1.ebuild:
+  Moved from app-sci/seaview to sci-biology/seaview.
+
+  22 Nov 2004; Karol Wojtaszek <sekretarz@gentoo.org> seaview-1-r1.ebuild:
+  Added to ~amd64, bug #72078
+
+  31 Oct 2004; Olivier Fisette <ribosome@gentoo.org> seaview-1-r1.ebuild:
+  Added to x86.
+
+*seaview-1 (24 Jun 2004)
+
+  24 Jun 2004; Olivier Fisette <ribosome@gentoo.org>
+  seaview-1-r1.ebuild, metedata.xml:
+  Added app-sci/clustalw as a mandatory dependency.
+  Set maintainer (ribosome).
+
+*seaview-1 (24 Jun 2004)
+
+  24 Jun 2004; David Holm <dholm@gentoo.org> seaview-1.ebuild:
+  Added to ~ppc.
+
+*seaview-1 (23 Jun 2004)
+
+  23 Jun 2004; Olivier Fisette <ribosome@gentoo.org>
+  seaview-1.ebuild, metadata.xml, files/29seaview :
+  Initial import.  Ebuild submitted by Olivier Fisette <ribosome@gentoo.org>.
+  Reference: Gentoo Bugzilla, bug #54055
+
diff --git a/sci-biology/seaview/Manifest b/sci-biology/seaview/Manifest
new file mode 100644
index 000000000000..0dad7588f900
--- /dev/null
+++ b/sci-biology/seaview/Manifest
@@ -0,0 +1,5 @@
+MD5 8d176cb069d21ce4a4cac1fc2fb727f9 ChangeLog 959
+MD5 1a46ccdd45f25abe962e4f46d7c7ee7d seaview-1-r1.ebuild 916
+MD5 7b87a6c33de5295e356b67218bd4fba9 metadata.xml 614
+MD5 81acca7fe3c919d7be4ef27307d9ce7d files/29seaview 26
+MD5 ee3d2374f6b28744f1b282577c0dcb38 files/digest-seaview-1-r1 56
diff --git a/sci-biology/seaview/files/29seaview b/sci-biology/seaview/files/29seaview
new file mode 100644
index 000000000000..64f2831dcaee
--- /dev/null
+++ b/sci-biology/seaview/files/29seaview
@@ -0,0 +1 @@
+PATH="/usr/share/seaview"
diff --git a/sci-biology/seaview/files/digest-seaview-1-r1 b/sci-biology/seaview/files/digest-seaview-1-r1
new file mode 100644
index 000000000000..1b50df5638af
--- /dev/null
+++ b/sci-biology/seaview/files/digest-seaview-1-r1
@@ -0,0 +1 @@
+MD5 48db16486992fed35dad053fed0734e0 seaview.tar 560640
diff --git a/sci-biology/seaview/metadata.xml b/sci-biology/seaview/metadata.xml
new file mode 100644
index 000000000000..29c4ec7801fc
--- /dev/null
+++ b/sci-biology/seaview/metadata.xml
@@ -0,0 +1,16 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<herd>sci</herd>
+	<maintainer>
+		<email>ribosome@gentoo.org</email>
+		<name>Olivier Fisette</name>
+	</maintainer>
+	<longdescription>
+		SeaView is a graphical multiple sequence alignment editor developped by
+		Manolo Gouy. SeaView is able to read and write various alignment
+		formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE). It allows to
+		manually edit the alignment, and also to run DOT-PLOT or CLUSTALW
+		programs to locally improve the alignment.
+	</longdescription>
+</pkgmetadata>
diff --git a/sci-biology/seaview/seaview-1-r1.ebuild b/sci-biology/seaview/seaview-1-r1.ebuild
new file mode 100644
index 000000000000..00d27f8eb449
--- /dev/null
+++ b/sci-biology/seaview/seaview-1-r1.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2004 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/seaview-1-r1.ebuild,v 1.1 2004/12/23 21:44:42 ribosome Exp $
+
+DESCRIPTION="A graphical multiple sequence alignment editor"
+HOMEPAGE="http://pbil.univ-lyon1.fr/software/${PN}.html"
+SRC_URI="ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/${PN}/${PN}.tar"
+LICENSE="public-domain"
+
+SLOT="0"
+KEYWORDS="x86 ~ppc ~amd64"
+IUSE=""
+
+DEPEND="x11-libs/fltk
+	sci-biology/clustalw"
+
+S=${WORKDIR}
+
+src_compile() {
+	# Corrects location of libfltk.
+	CFLAGS="${CFLAGS} -c -I/usr/include/fltk-1.1"
+	sed -ie 's:-L$(FLTK)/lib:-L/usr/lib/fltk-1.1:' Makefile
+
+	emake -e || die
+}
+
+src_install() {
+	dobin seaview seaview_align.sh
+	insinto /usr/share/${PN}
+	doins protein.mase seaview.help
+
+	# Sets the path for the package's help file.
+	insinto /etc/env.d
+	doins ${FILESDIR}/29seaview
+}