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| author |   Justin Lecher <jlec@gentoo.org> | 2013-03-13 16:08:31 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2013-03-13 16:08:31 +0000 |
| commit | 42de8d494df29f8412b8bf9ecd1f214ef544609e (patch) | |
| tree | 1df5e19243799b219022ae36cfefcc82423fd695 /sci-biology/seqan | |
| parent | revbump, patch managing pypy issue in tests (diff) | |
| download | gentoo-2-42de8d494df29f8412b8bf9ecd1f214ef544609e.tar.gz gentoo-2-42de8d494df29f8412b8bf9ecd1f214ef544609e.tar.bz2 gentoo-2-42de8d494df29f8412b8bf9ecd1f214ef544609e.zip | |
sci-biology/seqan: New addition
(Portage version: 2.2.0_alpha166/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
Diffstat (limited to 'sci-biology/seqan')
| -rw-r--r-- | sci-biology/seqan/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-biology/seqan/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/seqan/metadata.xml | 5 | ||||
| -rw-r--r-- | sci-biology/seqan/seqan-1.3.1.ebuild | 39 |
4 files changed, 58 insertions, 0 deletions
diff --git a/sci-biology/seqan/ChangeLog b/sci-biology/seqan/ChangeLog new file mode 100644 index 000000000000..3fbacbcad185 --- /dev/null +++ b/sci-biology/seqan/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/seqan +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/seqan/ChangeLog,v 1.1 2013/03/13 16:08:31 jlec Exp $ + +*seqan-1.3.1 (13 Mar 2013) + + 13 Mar 2013; Justin Lecher <jlec@gentoo.org> +seqan-1.3.1.ebuild, + +metadata.xml: + New addition + diff --git a/sci-biology/seqan/Manifest b/sci-biology/seqan/Manifest new file mode 100644 index 000000000000..5c742791e2f8 --- /dev/null +++ b/sci-biology/seqan/Manifest @@ -0,0 +1,4 @@ +DIST seqan-1.3.1.zip 8787521 SHA256 87eebe73ace9ada2f4664a768ae212d4acc5fb3ce87702709c3d15bf2d153aeb SHA512 dafacccb4647fd0fc5a055d33390cb85f1c00ca74132e9b3839a739916acf9a2990db7db4f09e34f899b283cad8ccf6553a60cc7693164f250f08260c8ce8ae4 WHIRLPOOL 5a0a80d09e80285a4fc9fb9fb71adbea6b0b324a6a219cd7c9ef3d30e88133f5b25b3cf792b2b89e4ed07ff612f4aa347dc6f94e06974f947fe980c2e0a5d26b +EBUILD seqan-1.3.1.ebuild 806 SHA256 e255db934386cbf1396599845eda0447a77b48d04f542c5fd521ce81d23b00f5 SHA512 d818081ca432446b580d5ac12424b475db8106885f1a6291b7dd9043057c2d8c7de474814f78bce8c3103575f854b1378a1ec0758589ac0f7cd03301be5876ba WHIRLPOOL 3776130f7b636ca7b5730a9d8f85a95c00600fad5fc1e98e4013038e19b852170449a4355663fe24b2bb5d334811131a83a31105646acb85949b4d3e670d0dd6 +MISC ChangeLog 247 SHA256 aece55c48db915259218eef40bb9fef812d183ca97508ef810caa74346e545ab SHA512 80ae4a84860c6f31499dcfc9e75120f7646d7256f117e3ad2a83457890d50c50cf8a2a9279d26860b879db90642cb617b551c8771593043f427f8fdfcc445786 WHIRLPOOL 5758ddc3d55ee2871662132cad3b17700b75167465460e83541ac91917df3288ed6e188989169ce67215890da4c6880b641abc919463fce966693aff1bbb552d +MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3 diff --git a/sci-biology/seqan/metadata.xml b/sci-biology/seqan/metadata.xml new file mode 100644 index 000000000000..f17a827e3101 --- /dev/null +++ b/sci-biology/seqan/metadata.xml @@ -0,0 +1,5 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> +</pkgmetadata> diff --git a/sci-biology/seqan/seqan-1.3.1.ebuild b/sci-biology/seqan/seqan-1.3.1.ebuild new file mode 100644 index 000000000000..5416535d39da --- /dev/null +++ b/sci-biology/seqan/seqan-1.3.1.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/seqan/seqan-1.3.1.ebuild,v 1.1 2013/03/13 16:08:31 jlec Exp $ + +EAPI=5 + +PYTHON_COMPAT=( python{2_6,2_7} ) + +inherit cmake-utils flag-o-matic python-single-r1 + +DESCRIPTION="C++ Sequence Analysis Library" +HOMEPAGE="http://www.seqan.de/" +SRC_URI="http://ftp.seqan.de/releases/${P}.zip" + +SLOT="0" +LICENSE="BSD GPL-3" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND="" +DEPEND="${RDEPEND}" + +S="${WORKDIR}"/${P}/cmake + +src_prepare() { + append-cppflags -I"${EPREFIX}/usr/include/bam" + rm -rf "${S}"/../lib/samtools || die + + sed \ + -e "s:docs:docs/.:g" \ + -e "/DESTINATION/s:seqan:docs/${PF}/html:g" \ + -i CMakeLists.txt || die + + sed \ + -e "/DESTINATION/s:bin):share/${PN}):g" \ + -i apps/CMakeLists.txt || die + + cmake-utils_src_prepare +} |