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| author |   Justin Lecher <jlec@gentoo.org> | 2013-02-20 16:23:04 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2013-02-20 16:23:04 +0000 |
| commit | c1f136fbaa4dde98c884401b5d5e9d724c3c3d24 (patch) | |
| tree | a0a3b612b11dac31e4bf6d32d32fe63a00eda514 /sci-biology/vaal | |
| parent | Version bump and add live ebuild. These new ebuilds always require the tools ... (diff) | |
| download | gentoo-2-c1f136fbaa4dde98c884401b5d5e9d724c3c3d24.tar.gz gentoo-2-c1f136fbaa4dde98c884401b5d5e9d724c3c3d24.tar.bz2 gentoo-2-c1f136fbaa4dde98c884401b5d5e9d724c3c3d24.zip | |
sci-biology/vaal: Version BUmp
(Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
Diffstat (limited to 'sci-biology/vaal')
| -rw-r--r-- | sci-biology/vaal/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-biology/vaal/metadata.xml | 10 | ||||
| -rw-r--r-- | sci-biology/vaal/vaal-45166.ebuild | 42 |
3 files changed, 55 insertions, 7 deletions
diff --git a/sci-biology/vaal/ChangeLog b/sci-biology/vaal/ChangeLog index b7764f8287da..c435e0fe4092 100644 --- a/sci-biology/vaal/ChangeLog +++ b/sci-biology/vaal/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/vaal -# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/ChangeLog,v 1.10 2012/06/25 19:09:19 jlec Exp $ +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/ChangeLog,v 1.11 2013/02/20 16:23:04 jlec Exp $ + +*vaal-45166 (20 Feb 2013) + + 20 Feb 2013; Justin Lecher <jlec@gentoo.org> +vaal-45166.ebuild, + metadata.xml: + Version BUmp *vaal-42179 (25 Jun 2012) diff --git a/sci-biology/vaal/metadata.xml b/sci-biology/vaal/metadata.xml index 3302123e5718..fc7c76942a10 100644 --- a/sci-biology/vaal/metadata.xml +++ b/sci-biology/vaal/metadata.xml @@ -1,9 +1,9 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> - <maintainer> - <email>weaver@gentoo.org</email> - <name>Andrey Kislyuk</name> - </maintainer> - <herd>sci-biology</herd> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/vaal/vaal-45166.ebuild b/sci-biology/vaal/vaal-45166.ebuild new file mode 100644 index 000000000000..8bef5eb8e9c8 --- /dev/null +++ b/sci-biology/vaal/vaal-45166.ebuild @@ -0,0 +1,42 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/vaal-45166.ebuild,v 1.1 2013/02/20 16:23:04 jlec Exp $ + +EAPI=5 + +AUTOTOOLS_AUTORECONF=yes + +inherit autotools-utils + +DESCRIPTION="A variant ascertainment algorithm that can be used to detect SNPs, indels, and other polymorphisms" +HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd/" +SRC_URI=" + ftp://ftp.broad.mit.edu/pub/crd/VAAL/latest_source_code/${P}.tar.gz + ftp://ftp.broad.mit.edu/pub/crd/VAAL/VAAL_manual.doc" + +LICENSE="Whitehead-MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="openmp" + +DEPEND=">=dev-libs/boost-1.41.0-r3" +RDEPEND="${DEPEND}" + +DOCS=( "${DISTDIR}/VAAL_manual.doc" ) + +src_prepare() { + sed \ + -e '/COPYING/d' \ + -i src/Makefile.am || die + + sed \ + -e 's:-ggdb::g' \ + -e '/AC_OPENMP_CEHCK/d' \ + -i configure.ac || die + autotools-utils_src_prepare +} + +src_configure(){ + local myeconfargs=( $(use_enable openmp) ) + autotools-utils_src_configure +} |