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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-04-25 23:08:33 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-04-25 23:08:33 +0000 |
| commit | 2b1a4d7f91d6533aaf3d7959b56f4a5ae03b7ad1 (patch) | |
| tree | bddd0ed2adac2c0e7119374fe0fd420d3d4371c0 /sci-biology | |
| parent | Bump to 1.1, fixes second half of #263867 (diff) | |
| download | gentoo-2-2b1a4d7f91d6533aaf3d7959b56f4a5ae03b7ad1.tar.gz gentoo-2-2b1a4d7f91d6533aaf3d7959b56f4a5ae03b7ad1.tar.bz2 gentoo-2-2b1a4d7f91d6533aaf3d7959b56f4a5ae03b7ad1.zip | |
Version bump
(Portage version: 2.2_rc30/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/paml/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/paml/paml-4.2b.ebuild | 39 |
2 files changed, 46 insertions, 2 deletions
diff --git a/sci-biology/paml/ChangeLog b/sci-biology/paml/ChangeLog index 14a46a4f9dff..b923e3fdc55a 100644 --- a/sci-biology/paml/ChangeLog +++ b/sci-biology/paml/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/paml -# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.4 2008/09/07 12:02:02 markusle Exp $ +# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.5 2009/04/25 23:08:33 weaver Exp $ + +*paml-4.2b (25 Apr 2009) + + 25 Apr 2009; Andrey Kislyuk <weaver@gentoo.org> +paml-4.2b.ebuild: + Version bump *paml-4.1 (07 Sep 2008) diff --git a/sci-biology/paml/paml-4.2b.ebuild b/sci-biology/paml/paml-4.2b.ebuild new file mode 100644 index 000000000000..324c907c870b --- /dev/null +++ b/sci-biology/paml/paml-4.2b.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/paml-4.2b.ebuild,v 1.1 2009/04/25 23:08:33 weaver Exp $ + +inherit toolchain-funcs + +MY_P="${PN}42" +DESCRIPTION="Phylogenetic Analysis by Maximum Likelihood" +HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html" +SRC_URI="http://abacus.gene.ucl.ac.uk/software/${PN}${PV}.tar.gz" +LICENSE="free-noncomm" +SLOT="0" +KEYWORDS="~x86 ~amd64" +IUSE="" +RDEPEND="" +DEPEND="${RDEPEND}" +S="${WORKDIR}/${MY_P}" + +src_compile() { + cd src + emake \ + -f Makefile.UNIX \ + CC="$(tc-getCC)" \ + CFLAGS="${CFLAGS}" \ + || die "make failed" +} + +src_install() { + pushd "${S}"/src + dobin baseml codeml basemlg mcmctree pamp evolver yn00 chi2 + popd + dodoc README.txt doc/* + insinto /usr/share/${PN}/control + doins *.ctl || die "Failed to install control files" + insinto /usr/share/${PN}/dat + doins stewart* *.dat dat/* || die "Failed to install data files" + insinto /usr/share/${PN} + doins -r examples/ || die "Failed to install examples" +} |