Add fno-unit-at-a-time when using GCC 3.4. Removed old versions.

(Portage version: 2.0.54)

6 files changed, 8 insertions, 108 deletions

diff --git a/sci-biology/t-coffee/ChangeLog b/sci-biology/t-coffee/ChangeLog
index bb9060a083ae..df5ba4c4bb95 100644
--- a/sci-biology/t-coffee/ChangeLog
+++ b/sci-biology/t-coffee/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/t-coffee
 # Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.13 2006/03/07 21:41:22 spyderous Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.14 2006/03/16 21:44:32 ribosome Exp $
+
+  16 Mar 2006; Olivier Fisette <ribosome@gentoo.org> -t-coffee-2.66.ebuild,
+  -t-coffee-3.27.ebuild, t-coffee-3.84.ebuild:
+  Add fno-unit-at-a-time when using GCC 3.4. Removed old versions.
 
 *t-coffee-3.84 (07 Mar 2006)
 
diff --git a/sci-biology/t-coffee/files/digest-t-coffee-2.66 b/sci-biology/t-coffee/files/digest-t-coffee-2.66
deleted file mode 100644
index ba174557b6a3..000000000000
--- a/sci-biology/t-coffee/files/digest-t-coffee-2.66
+++ /dev/null
@@ -1 +0,0 @@
-MD5 ed49db50f3b618b77d719c111f21d915 T-COFFEE_distribution_Version_2.66.tar.gz 1509938
diff --git a/sci-biology/t-coffee/files/digest-t-coffee-3.27 b/sci-biology/t-coffee/files/digest-t-coffee-3.27
deleted file mode 100644
index 2eb2b6698379..000000000000
--- a/sci-biology/t-coffee/files/digest-t-coffee-3.27
+++ /dev/null
@@ -1 +0,0 @@
-MD5 747d907f4b87e07d7b1e670a2b263e23 T-COFFEE_distribution_Version_3.27.tar.gz 1295287
diff --git a/sci-biology/t-coffee/t-coffee-2.66.ebuild b/sci-biology/t-coffee/t-coffee-2.66.ebuild
deleted file mode 100644
index d3fb624c2678..000000000000
--- a/sci-biology/t-coffee/t-coffee-2.66.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2005 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-2.66.ebuild,v 1.4 2005/10/17 05:20:43 josejx Exp $
-
-inherit toolchain-funcs
-
-DESCRIPTION="A multiple sequence alignment package"
-HOMEPAGE="http://igs-server.cnrs-mrs.fr/~cnotred/Projects_home_page/t_coffee_home_page.html"
-SRC_URI="http://igs-server.cnrs-mrs.fr/~cnotred/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz"
-LICENSE="t-coffee"
-
-RESTRICT="nomirror"
-
-SLOT="0"
-IUSE=""
-KEYWORDS="ppc x86"
-
-DEPEND="sci-biology/clustalw"
-
-TCDIR="${WORKDIR}/T-COFFEE_distribution_Version_${PV}"
-S=${TCDIR}/t_coffee_source
-
-src_unpack(){
-	unpack ${A}
-	cd ${S}
-	sed -e "s/CC	= cc/CC	= $(tc-getCC) ${CFLAGS}/" -i makefile || die
-}
-
-src_compile() {
-	make all || die
-}
-
-src_install() {
-	cd ${TCDIR}/bin
-	dobin t_coffee
-	insinto /usr/share/${PN}/lib/html
-	doins ${TCDIR}/html/*
-
-	dodoc ${TCDIR}/doc/README4T-COFFEE
-	insinto /usr/share/doc/${PF}
-	doins ${TCDIR}/doc/t_coffee{_doc.{doc,pdf},.pdf}
-	doins ${TCDIR}/doc/*.txt
-
-	insinto /usr/share/${PN}/example
-	doins ${TCDIR}/example/*
-}
diff --git a/sci-biology/t-coffee/t-coffee-3.27.ebuild b/sci-biology/t-coffee/t-coffee-3.27.ebuild
deleted file mode 100644
index 867b7c96652e..000000000000
--- a/sci-biology/t-coffee/t-coffee-3.27.ebuild
+++ /dev/null
@@ -1,57 +0,0 @@
-# Copyright 1999-2005 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-3.27.ebuild,v 1.2 2005/12/08 19:48:52 ribosome Exp $
-
-inherit toolchain-funcs
-
-DESCRIPTION="A multiple sequence alignment package"
-LICENSE="t-coffee"
-HOMEPAGE="http://igs-server.cnrs-mrs.fr/~cnotred/Projects_home_page/t_coffee_home_page.html"
-SRC_URI="http://igs-server.cnrs-mrs.fr/~cnotred/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz"
-
-SLOT="0"
-IUSE=""
-KEYWORDS="~ppc ~x86"
-
-RESTRICT="nomirror"
-
-DEPEND="sci-biology/clustalw"
-
-TCDIR="${WORKDIR}/T-COFFEE_distribution_Version_${PV}"
-S="${TCDIR}/t_coffee_source"
-
-src_unpack() {
-	unpack ${A}
-	cd "${S}"
-	sed -e "s/CC	= cc/CC	= $(tc-getCC) ${CFLAGS}/" -i makefile || die \
-		"Failed to patch makefile."
-}
-
-die_compile() {
-	echo
-	eerror "If you experience an internal compiler error (consult the above"
-	eerror "messages), try compiling t-coffee using very modest compiler flags."
-	eerror "See bug #114745 on the Gentoo Bugzilla for more details."
-	die "Compilation failed"
-}
-
-src_compile() {
-	make all || die_compile
-}
-
-src_install() {
-	cd "${TCDIR}"/bin
-	dobin t_coffee || die "Failed to install program."
-	insinto /usr/share/${PN}/lib/html
-	doins ${TCDIR}/html/* || die "Failed to install HTML documentation,"
-
-	dodoc ${TCDIR}/doc/README4T-COFFEE || die \
-		"Failed to install basic documentation."
-	insinto /usr/share/doc/${PF}
-	doins ${TCDIR}/doc/t_coffee{_doc.{doc,pdf},.pdf} || die \
-		"Failed to install manuals and articles."
-	doins ${TCDIR}/doc/*.txt || die "Failed to install documentation."
-
-	insinto /usr/share/${PN}/example
-	doins ${TCDIR}/example/* || die "Failed to install example files."
-}
diff --git a/sci-biology/t-coffee/t-coffee-3.84.ebuild b/sci-biology/t-coffee/t-coffee-3.84.ebuild
index 100840872c61..c3dd1c5ce7ed 100644
--- a/sci-biology/t-coffee/t-coffee-3.84.ebuild
+++ b/sci-biology/t-coffee/t-coffee-3.84.ebuild
@@ -1,8 +1,8 @@
 # Copyright 1999-2006 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-3.84.ebuild,v 1.1 2006/03/07 21:41:22 spyderous Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-3.84.ebuild,v 1.2 2006/03/16 21:44:32 ribosome Exp $
 
-inherit toolchain-funcs
+inherit toolchain-funcs flag-o-matic
 
 DESCRIPTION="A multiple sequence alignment package"
 LICENSE="t-coffee"
@@ -36,6 +36,7 @@ die_compile() {
 }
 
 src_compile() {
+	[[ $(gcc-version) == "3.4" ]] && append-flags -fno-unit-at-a-time
 	make all || die_compile
 }