sci-biology/abyss: Drop old

(Portage version: 2.2.0_alpha196/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)

4 files changed, 5 insertions, 102 deletions

diff --git a/sci-biology/abyss/ChangeLog b/sci-biology/abyss/ChangeLog
index e435c9ab5f36..62ae090239c6 100644
--- a/sci-biology/abyss/ChangeLog
+++ b/sci-biology/abyss/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/abyss
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/ChangeLog,v 1.17 2013/07/27 22:22:05 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/ChangeLog,v 1.18 2013/08/11 13:29:32 jlec Exp $
+
+  11 Aug 2013; Justin Lecher <jlec@gentoo.org> -abyss-1.2.3.ebuild,
+  -abyss-1.2.7.ebuild, -abyss-1.3.0.ebuild:
+  Drop old
 
   27 Jul 2013; Agostino Sarubbo <ago@gentoo.org> abyss-1.3.3.ebuild:
   Stable for x86, wrt bug #477144
diff --git a/sci-biology/abyss/abyss-1.2.3.ebuild b/sci-biology/abyss/abyss-1.2.3.ebuild
deleted file mode 100644
index 6bd129f02523..000000000000
--- a/sci-biology/abyss/abyss-1.2.3.ebuild
+++ /dev/null
@@ -1,30 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.2.3.ebuild,v 1.5 2011/04/29 17:27:31 mr_bones_ Exp $
-
-EAPI="2"
-
-DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler"
-HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss/"
-SRC_URI="http://www.bcgsc.ca/downloads/abyss/${P}.tar.gz"
-
-LICENSE="abyss"
-SLOT="0"
-IUSE="+mpi"
-KEYWORDS="amd64 x86"
-
-DEPEND="
-	dev-cpp/sparsehash
-	mpi? ( virtual/mpi )"
-RDEPEND="${DEPEND}"
-
-# todo: --enable-maxk=N configure option
-# todo: fix automagic mpi toggling
-
-src_prepare() {
-	sed 's:-Werror::g' -i configure || die
-}
-
-src_install() {
-	einstall || die
-}
diff --git a/sci-biology/abyss/abyss-1.2.7.ebuild b/sci-biology/abyss/abyss-1.2.7.ebuild
deleted file mode 100644
index 2bfafaaab3a9..000000000000
--- a/sci-biology/abyss/abyss-1.2.7.ebuild
+++ /dev/null
@@ -1,35 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.2.7.ebuild,v 1.2 2011/04/28 15:01:05 jlec Exp $
-
-EAPI="4"
-
-inherit autotools
-
-DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler"
-HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss/"
-SRC_URI="http://www.bcgsc.ca/downloads/abyss/${P}.tar.gz"
-
-LICENSE="abyss"
-SLOT="0"
-IUSE="+mpi openmp"
-KEYWORDS="amd64 x86"
-
-DEPEND="
-	dev-cpp/sparsehash
-	mpi? ( virtual/mpi )"
-RDEPEND="${DEPEND}"
-
-# todo: --enable-maxk=N configure option
-# todo: fix automagic mpi toggling
-
-src_prepare() {
-	sed -i -e "s/-Werror//" configure.ac || die #365195
-	sed -i -e "/dist_pkgdoc_DATA/d" Makefile.am || die
-	eautoreconf
-}
-
-src_configure() {
-	econf \
-		$(use_enable openmp)
-}
diff --git a/sci-biology/abyss/abyss-1.3.0.ebuild b/sci-biology/abyss/abyss-1.3.0.ebuild
deleted file mode 100644
index 4ac14a4e2c49..000000000000
--- a/sci-biology/abyss/abyss-1.3.0.ebuild
+++ /dev/null
@@ -1,36 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.3.0.ebuild,v 1.2 2012/06/20 20:48:56 jlec Exp $
-
-EAPI="4"
-
-inherit autotools
-
-DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler"
-HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss/"
-SRC_URI="http://www.bcgsc.ca/downloads/abyss/${P}.tar.gz"
-
-LICENSE="abyss"
-SLOT="0"
-IUSE="+mpi openmp"
-KEYWORDS="~amd64 ~x86"
-
-DEPEND="
-	dev-cpp/sparsehash
-	mpi? ( virtual/mpi )"
-RDEPEND="${DEPEND}"
-
-# todo: --enable-maxk=N configure option
-# todo: fix automagic mpi toggling
-
-src_prepare() {
-	sed -i -e "s/-Werror//" configure.ac || die #365195
-	sed -i -e "/dist_pkgdoc_DATA/d" Makefile.am || die
-	eautoreconf
-}
-
-src_configure() {
-	econf \
-		--docdir="${EPREFIX}/usr/share/doc/${PF}" \
-		$(use_enable openmp)
-}