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author | Andrey Kislyuk <weaver@gentoo.org> | 2009-11-25 03:57:19 +0000 |
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committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-11-25 03:57:19 +0000 |
commit | 3f17a2604dda26a48b41a18333577735b7a7e5b0 (patch) | |
tree | d17c1fb2e598882d164df2f1947f9a88f4c0dc11 /sci-biology | |
parent | Sort dependencies alphabetically. Add missing lua dependency. (diff) | |
download | gentoo-2-3f17a2604dda26a48b41a18333577735b7a7e5b0.tar.gz gentoo-2-3f17a2604dda26a48b41a18333577735b7a7e5b0.tar.bz2 gentoo-2-3f17a2604dda26a48b41a18333577735b7a7e5b0.zip |
Drop old versions
(Portage version: 2.2_rc30/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology')
-rw-r--r-- | sci-biology/t-coffee/ChangeLog | 6 | ||||
-rw-r--r-- | sci-biology/t-coffee/t-coffee-5.31.ebuild | 67 | ||||
-rw-r--r-- | sci-biology/t-coffee/t-coffee-6.82.ebuild | 57 |
3 files changed, 5 insertions, 125 deletions
diff --git a/sci-biology/t-coffee/ChangeLog b/sci-biology/t-coffee/ChangeLog index 4b7872f69ac7..95bf6a1f4c30 100644 --- a/sci-biology/t-coffee/ChangeLog +++ b/sci-biology/t-coffee/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/t-coffee # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.37 2009/11/24 18:21:23 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.38 2009/11/25 03:57:19 weaver Exp $ + + 24 Nov 2009; Andrey Kislyuk <weaver@gentoo.org> -t-coffee-5.31.ebuild, + -t-coffee-6.82.ebuild: + Drop old versions *t-coffee-8.14 (24 Nov 2009) diff --git a/sci-biology/t-coffee/t-coffee-5.31.ebuild b/sci-biology/t-coffee/t-coffee-5.31.ebuild deleted file mode 100644 index 78165a4a41a3..000000000000 --- a/sci-biology/t-coffee/t-coffee-5.31.ebuild +++ /dev/null @@ -1,67 +0,0 @@ -# Copyright 1999-2008 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-5.31.ebuild,v 1.4 2008/02/17 11:02:35 opfer Exp $ - -inherit toolchain-funcs flag-o-matic - -DESCRIPTION="A multiple sequence alignment package" -LICENSE="t-coffee" -HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html" -SRC_URI="http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz" - -SLOT="0" -IUSE="" -KEYWORDS="amd64 ppc x86" - -RESTRICT="mirror" - -DEPEND="sci-biology/clustalw" - -TCDIR="${WORKDIR}/T-COFFEE_distribution_Version_${PV}" -S="${TCDIR}/t_coffee_source" - -src_unpack() { - unpack ${A} - cd "${S}" - sed -e "s/CC = cc/CC = $(tc-getCC) ${CFLAGS}/" -i makefile || die \ - "Failed to patch makefile." -} - -die_compile() { - echo - eerror "If you experience an internal compiler error (consult the above" - eerror "messages), try compiling t-coffee using very modest compiler flags." - eerror "See bug #114745 on the Gentoo Bugzilla for more details." - die "Compilation failed" -} - -src_compile() { - [[ $(gcc-version) == "3.4" ]] && append-flags -fno-unit-at-a-time - [[ $(gcc-version) == "4.1" ]] && append-flags -fno-unit-at-a-time - make all || die_compile -} - -src_install() { - dobin "${TCDIR}"/bin/t_coffee \ - || die "Failed to install program." - - insinto /usr/share/${PN}/lib/html - doins "${TCDIR}"/html/* \ - || die "Failed to install Web interface files." - - cd "${TCDIR}"/doc - dodoc aln_compare.doc.txt README4T-COFFEE seq_reformat.doc.txt \ - t_coffee_technical.txt t_coffee_tutorial.txt \ - || die "Failed to install text documentation." - - dohtml t_coffee_technical.htm t_coffee_tutorial.htm \ - || die "Failed to install HTML documentation." - - insinto /usr/share/doc/${PF} - doins t_coffee_technical.doc t_coffee_tutorial.doc \ - || die "Failed to install DOC documentation." - - insinto /usr/share/${PN}/example - doins "${TCDIR}"/example/* \ - || die "Failed to install example files." -} diff --git a/sci-biology/t-coffee/t-coffee-6.82.ebuild b/sci-biology/t-coffee/t-coffee-6.82.ebuild deleted file mode 100644 index c91b5280abe7..000000000000 --- a/sci-biology/t-coffee/t-coffee-6.82.ebuild +++ /dev/null @@ -1,57 +0,0 @@ -# Copyright 1999-2008 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-6.82.ebuild,v 1.1 2008/09/06 11:29:59 markusle Exp $ - -inherit toolchain-funcs flag-o-matic - -DESCRIPTION="A multiple sequence alignment package" -LICENSE="GPL-2" -HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html" -SRC_URI="http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz" - -SLOT="0" -IUSE="" -KEYWORDS="~amd64 ~ppc ~x86" - -DEPEND="sci-biology/clustalw" - -TCDIR="${WORKDIR}/T-COFFEE_distribution_Version_${PV}" -S="${TCDIR}/t_coffee_source" - -die_compile() { - echo - eerror "If you experience an internal compiler error (consult the above" - eerror "messages), try compiling t-coffee using very modest compiler flags." - eerror "See bug #114745 on the Gentoo Bugzilla for more details." - die "Compilation failed" -} - -src_compile() { - [[ $(gcc-version) == "3.4" ]] && append-flags -fno-unit-at-a-time - [[ $(gcc-version) == "4.1" ]] && append-flags -fno-unit-at-a-time - CC="$(tc-getCC)" CFLAGS="${CFLAGS}" emake || die_compile -} - -src_install() { - dobin t_coffee || die "Failed to install program." - - insinto /usr/share/${PN}/lib/html - doins "${TCDIR}"/html/* \ - || die "Failed to install Web interface files." - - cd "${TCDIR}"/doc - dodoc aln_compare.doc.txt seq_reformat.doc.txt \ - t_coffee_technical.txt t_coffee_tutorial.txt \ - || die "Failed to install text documentation." - - dohtml t_coffee_technical.htm t_coffee_tutorial.htm \ - || die "Failed to install HTML documentation." - - insinto /usr/share/doc/${PF} - doins t_coffee_technical.doc t_coffee_tutorial.doc \ - || die "Failed to install DOC documentation." - - insinto /usr/share/${PN}/example - doins "${TCDIR}"/example/* \ - || die "Failed to install example files." -} |