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authorAndrey Kislyuk <weaver@gentoo.org>2009-11-25 03:57:19 +0000
committerAndrey Kislyuk <weaver@gentoo.org>2009-11-25 03:57:19 +0000
commit3f17a2604dda26a48b41a18333577735b7a7e5b0 (patch)
treed17c1fb2e598882d164df2f1947f9a88f4c0dc11 /sci-biology
parentSort dependencies alphabetically. Add missing lua dependency. (diff)
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Drop old versions
(Portage version: 2.2_rc30/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/t-coffee/ChangeLog6
-rw-r--r--sci-biology/t-coffee/t-coffee-5.31.ebuild67
-rw-r--r--sci-biology/t-coffee/t-coffee-6.82.ebuild57
3 files changed, 5 insertions, 125 deletions
diff --git a/sci-biology/t-coffee/ChangeLog b/sci-biology/t-coffee/ChangeLog
index 4b7872f69ac7..95bf6a1f4c30 100644
--- a/sci-biology/t-coffee/ChangeLog
+++ b/sci-biology/t-coffee/ChangeLog
@@ -1,6 +1,10 @@
# ChangeLog for sci-biology/t-coffee
# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.37 2009/11/24 18:21:23 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.38 2009/11/25 03:57:19 weaver Exp $
+
+ 24 Nov 2009; Andrey Kislyuk <weaver@gentoo.org> -t-coffee-5.31.ebuild,
+ -t-coffee-6.82.ebuild:
+ Drop old versions
*t-coffee-8.14 (24 Nov 2009)
diff --git a/sci-biology/t-coffee/t-coffee-5.31.ebuild b/sci-biology/t-coffee/t-coffee-5.31.ebuild
deleted file mode 100644
index 78165a4a41a3..000000000000
--- a/sci-biology/t-coffee/t-coffee-5.31.ebuild
+++ /dev/null
@@ -1,67 +0,0 @@
-# Copyright 1999-2008 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-5.31.ebuild,v 1.4 2008/02/17 11:02:35 opfer Exp $
-
-inherit toolchain-funcs flag-o-matic
-
-DESCRIPTION="A multiple sequence alignment package"
-LICENSE="t-coffee"
-HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"
-SRC_URI="http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz"
-
-SLOT="0"
-IUSE=""
-KEYWORDS="amd64 ppc x86"
-
-RESTRICT="mirror"
-
-DEPEND="sci-biology/clustalw"
-
-TCDIR="${WORKDIR}/T-COFFEE_distribution_Version_${PV}"
-S="${TCDIR}/t_coffee_source"
-
-src_unpack() {
- unpack ${A}
- cd "${S}"
- sed -e "s/CC = cc/CC = $(tc-getCC) ${CFLAGS}/" -i makefile || die \
- "Failed to patch makefile."
-}
-
-die_compile() {
- echo
- eerror "If you experience an internal compiler error (consult the above"
- eerror "messages), try compiling t-coffee using very modest compiler flags."
- eerror "See bug #114745 on the Gentoo Bugzilla for more details."
- die "Compilation failed"
-}
-
-src_compile() {
- [[ $(gcc-version) == "3.4" ]] && append-flags -fno-unit-at-a-time
- [[ $(gcc-version) == "4.1" ]] && append-flags -fno-unit-at-a-time
- make all || die_compile
-}
-
-src_install() {
- dobin "${TCDIR}"/bin/t_coffee \
- || die "Failed to install program."
-
- insinto /usr/share/${PN}/lib/html
- doins "${TCDIR}"/html/* \
- || die "Failed to install Web interface files."
-
- cd "${TCDIR}"/doc
- dodoc aln_compare.doc.txt README4T-COFFEE seq_reformat.doc.txt \
- t_coffee_technical.txt t_coffee_tutorial.txt \
- || die "Failed to install text documentation."
-
- dohtml t_coffee_technical.htm t_coffee_tutorial.htm \
- || die "Failed to install HTML documentation."
-
- insinto /usr/share/doc/${PF}
- doins t_coffee_technical.doc t_coffee_tutorial.doc \
- || die "Failed to install DOC documentation."
-
- insinto /usr/share/${PN}/example
- doins "${TCDIR}"/example/* \
- || die "Failed to install example files."
-}
diff --git a/sci-biology/t-coffee/t-coffee-6.82.ebuild b/sci-biology/t-coffee/t-coffee-6.82.ebuild
deleted file mode 100644
index c91b5280abe7..000000000000
--- a/sci-biology/t-coffee/t-coffee-6.82.ebuild
+++ /dev/null
@@ -1,57 +0,0 @@
-# Copyright 1999-2008 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-6.82.ebuild,v 1.1 2008/09/06 11:29:59 markusle Exp $
-
-inherit toolchain-funcs flag-o-matic
-
-DESCRIPTION="A multiple sequence alignment package"
-LICENSE="GPL-2"
-HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"
-SRC_URI="http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz"
-
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~ppc ~x86"
-
-DEPEND="sci-biology/clustalw"
-
-TCDIR="${WORKDIR}/T-COFFEE_distribution_Version_${PV}"
-S="${TCDIR}/t_coffee_source"
-
-die_compile() {
- echo
- eerror "If you experience an internal compiler error (consult the above"
- eerror "messages), try compiling t-coffee using very modest compiler flags."
- eerror "See bug #114745 on the Gentoo Bugzilla for more details."
- die "Compilation failed"
-}
-
-src_compile() {
- [[ $(gcc-version) == "3.4" ]] && append-flags -fno-unit-at-a-time
- [[ $(gcc-version) == "4.1" ]] && append-flags -fno-unit-at-a-time
- CC="$(tc-getCC)" CFLAGS="${CFLAGS}" emake || die_compile
-}
-
-src_install() {
- dobin t_coffee || die "Failed to install program."
-
- insinto /usr/share/${PN}/lib/html
- doins "${TCDIR}"/html/* \
- || die "Failed to install Web interface files."
-
- cd "${TCDIR}"/doc
- dodoc aln_compare.doc.txt seq_reformat.doc.txt \
- t_coffee_technical.txt t_coffee_tutorial.txt \
- || die "Failed to install text documentation."
-
- dohtml t_coffee_technical.htm t_coffee_tutorial.htm \
- || die "Failed to install HTML documentation."
-
- insinto /usr/share/doc/${PF}
- doins t_coffee_technical.doc t_coffee_tutorial.doc \
- || die "Failed to install DOC documentation."
-
- insinto /usr/share/${PN}/example
- doins "${TCDIR}"/example/* \
- || die "Failed to install example files."
-}