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authorTomas Chvatal <scarabeus@gentoo.org>2010-10-18 11:31:12 +0000
committerTomas Chvatal <scarabeus@gentoo.org>2010-10-18 11:31:12 +0000
commit50033cfd2d31acd9b272531fc07d58137afe8bbc (patch)
tree5edd8d6c550640f471bbf8c0db3c68a5c6e9107e /sci-biology
parentAdd some calls to die(). (diff)
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Treeclean per bug #278192.
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/mpiblast/ChangeLog29
-rw-r--r--sci-biology/mpiblast/Manifest4
-rw-r--r--sci-biology/mpiblast/metadata.xml9
-rw-r--r--sci-biology/mpiblast/mpiblast-1.6.0.ebuild36
4 files changed, 0 insertions, 78 deletions
diff --git a/sci-biology/mpiblast/ChangeLog b/sci-biology/mpiblast/ChangeLog
deleted file mode 100644
index 9419fbe4456c..000000000000
--- a/sci-biology/mpiblast/ChangeLog
+++ /dev/null
@@ -1,29 +0,0 @@
-# ChangeLog for sci-biology/mpiblast
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mpiblast/ChangeLog,v 1.3 2010/07/31 19:20:25 weaver Exp $
-
-*mpiblast-1.6.0 (31 Jul 2010)
-
- 31 Jul 2010; Andrey Kislyuk <weaver@gentoo.org>
- -mpiblast-1.6.0_beta2.ebuild, +mpiblast-1.6.0.ebuild:
- Version bump, still fails to compile with gcc >= 4.4
-
-*mpiblast-1.6.0_beta2 (17 Jun 2010)
-
- 17 Jun 2010; Andrey Kislyuk <weaver@gentoo.org>
- -files/mpiblast-1.5.0-fix-build.patch, -mpiblast-1.5.0.ebuild,
- +mpiblast-1.6.0_beta2.ebuild:
- Version bump, drop keywords (package does not compile with >=gcc-4.4; has
- other problems)
-
-*mpiblast-1.5.0 (12 Apr 2009)
-
- 12 Apr 2009; Andrey Kislyuk <weaver@gentoo.org>
- +files/mpiblast-1.5.0-fix-build.patch, +metadata.xml,
- +mpiblast-1.5.0.ebuild:
- Import from Science overlay. Thanks to Justin Bronder for build patch.
-
- 02 Apr 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog:
- New package sci-biology/mpiblast (previously bundled with
- sci-biology/ncbi-tools), ebuild written by me
-
diff --git a/sci-biology/mpiblast/Manifest b/sci-biology/mpiblast/Manifest
deleted file mode 100644
index 31136b85ec97..000000000000
--- a/sci-biology/mpiblast/Manifest
+++ /dev/null
@@ -1,4 +0,0 @@
-DIST mpiBLAST-1.6.0.tgz 65155700 RMD160 a41ef0c05e324a7ea9dc4b468774f0969967c539 SHA1 b72af6c992915c3929549df1a4a03aa8558772db SHA256 ae61390c302d8c52c01e6bef64502f90db922fead00473a9446d180ebc815c81
-EBUILD mpiblast-1.6.0.ebuild 762 RMD160 e1018959fc653a7bc3ce0482b6d95700ffef4ffc SHA1 1f07d347c1ae2a42ff4426a8fa2f9015f547e0ae SHA256 5ad8a3b527ed8365f1603e4cff1d833d86e3d1ab327b2a2ee57312f23e83ee29
-MISC ChangeLog 1092 RMD160 4334064ebb150195b3b7865edf5318a8d019f0a1 SHA1 64b9084e097095bb823f167c3fb0eff4840cc96d SHA256 505d4a76c95809bad0111def54cdce6616c7fc16bf8e8d36b8db619c85589011
-MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
diff --git a/sci-biology/mpiblast/metadata.xml b/sci-biology/mpiblast/metadata.xml
deleted file mode 100644
index 3302123e5718..000000000000
--- a/sci-biology/mpiblast/metadata.xml
+++ /dev/null
@@ -1,9 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer>
- <email>weaver@gentoo.org</email>
- <name>Andrey Kislyuk</name>
- </maintainer>
- <herd>sci-biology</herd>
-</pkgmetadata>
diff --git a/sci-biology/mpiblast/mpiblast-1.6.0.ebuild b/sci-biology/mpiblast/mpiblast-1.6.0.ebuild
deleted file mode 100644
index 011d9ad05f1e..000000000000
--- a/sci-biology/mpiblast/mpiblast-1.6.0.ebuild
+++ /dev/null
@@ -1,36 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mpiblast/mpiblast-1.6.0.ebuild,v 1.1 2010/07/31 19:20:25 weaver Exp $
-
-EAPI="2"
-
-inherit eutils
-
-DESCRIPTION="An MPI implementation of NCBI BLAST"
-HOMEPAGE="http://www.mpiblast.org/"
-SRC_URI="http://www.mpiblast.org/downloads/files/mpiBLAST-${PV}.tgz"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE=""
-KEYWORDS=""
-
-# app-shells/tcsh
-DEPEND="virtual/mpi
- =sci-biology/ncbi-tools-20090301"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/${PN}-1.6.0"
-
-src_prepare() {
- sed -i 's/if test "@ARCH@" == "normal"/if true/' "${S}"/Makefile.{am,in} || die
-}
-
-src_compile() {
- emake ncbi || die
- emake || die
-}
-
-src_install() {
- einstall || die
-}