sci-biology/allpathslg: Version Bump

(Portage version: 2.2.0_alpha188/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)

3 files changed, 45 insertions, 3 deletions

diff --git a/sci-biology/allpathslg/ChangeLog b/sci-biology/allpathslg/ChangeLog
index 912c1f0d5ab4..1c91bac4386a 100644
--- a/sci-biology/allpathslg/ChangeLog
+++ b/sci-biology/allpathslg/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/allpathslg
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/ChangeLog,v 1.14 2013/03/11 14:36:10 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/ChangeLog,v 1.15 2013/07/17 08:33:08 jlec Exp $
+
+*allpathslg-47093 (17 Jul 2013)
+
+  17 Jul 2013; Justin Lecher <jlec@gentoo.org> allpathslg-42337.ebuild,
+  +allpathslg-47093.ebuild:
+  Version Bump
 
   11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
   Drop Andrey as maintainer so that bugs get assigned to sci-biology directly
diff --git a/sci-biology/allpathslg/allpathslg-42337.ebuild b/sci-biology/allpathslg/allpathslg-42337.ebuild
index 487a2953d403..303bedc135f6 100644
--- a/sci-biology/allpathslg/allpathslg-42337.ebuild
+++ b/sci-biology/allpathslg/allpathslg-42337.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2013 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/allpathslg-42337.ebuild,v 1.4 2013/02/20 15:56:10 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/allpathslg-42337.ebuild,v 1.5 2013/07/17 08:33:08 jlec Exp $
 
 EAPI=4
 
@@ -13,7 +13,7 @@ SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_
 LICENSE="MIT"
 SLOT="0"
 IUSE=""
-KEYWORDS="amd64"
+KEYWORDS="amd64 ~x86"
 
 DEPEND="
 	dev-libs/boost
diff --git a/sci-biology/allpathslg/allpathslg-47093.ebuild b/sci-biology/allpathslg/allpathslg-47093.ebuild
new file mode 100644
index 000000000000..5686eb41e407
--- /dev/null
+++ b/sci-biology/allpathslg/allpathslg-47093.ebuild
@@ -0,0 +1,36 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/allpathslg-47093.ebuild,v 1.1 2013/07/17 08:33:08 jlec Exp $
+
+EAPI=5
+
+inherit autotools flag-o-matic
+
+DESCRIPTION="De novo assembly of whole-genome shotgun microreads"
+HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd"
+SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86"
+
+DEPEND="
+	dev-libs/boost
+	!sci-biology/allpaths
+	sci-biology/vaal"
+RDEPEND=""
+
+src_prepare() {
+	sed -i 's/-ggdb//' configure.ac || die
+	eautoreconf
+}
+
+src_install() {
+	default
+#	einstall || die
+	# Provided by sci-biology/vaal
+	for i in QueryLookupTable ScaffoldAccuracy MakeLookupTable Fastb ShortQueryLookup; do
+		rm "${D}/usr/bin/$i" || die
+	done
+}