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authorJustin Lecher <jlec@gentoo.org>2014-01-06 08:25:30 +0000
committerJustin Lecher <jlec@gentoo.org>2014-01-06 08:25:30 +0000
commit7951e9260e905229e22f88f62d8a2d35761e2c42 (patch)
treeabbfdcd97f86ff38945b074c32c650add8b4c404 /sci-biology
parentdev-python/python-sqlparse: Drop old (diff)
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sci-biology/clustalw: Drop old and clean base.eclass usage
(Portage version: 2.2.8/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/clustalw/ChangeLog8
-rw-r--r--sci-biology/clustalw/clustalw-1.83-r2.ebuild36
-rw-r--r--sci-biology/clustalw/clustalw-1.83-r3.ebuild36
-rw-r--r--sci-biology/clustalw/clustalw-2.0.11.ebuild18
-rw-r--r--sci-biology/clustalw/clustalw-2.0.12.ebuild18
5 files changed, 6 insertions, 110 deletions
diff --git a/sci-biology/clustalw/ChangeLog b/sci-biology/clustalw/ChangeLog
index 4933f03e111a..c753f3a6aad7 100644
--- a/sci-biology/clustalw/ChangeLog
+++ b/sci-biology/clustalw/ChangeLog
@@ -1,6 +1,10 @@
# ChangeLog for sci-biology/clustalw
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalw/ChangeLog,v 1.28 2013/03/11 14:56:20 jlec Exp $
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalw/ChangeLog,v 1.29 2014/01/06 08:25:30 jlec Exp $
+
+ 06 Jan 2014; Justin Lecher <jlec@gentoo.org> -clustalw-1.83-r2.ebuild,
+ -clustalw-1.83-r3.ebuild, -clustalw-2.0.11.ebuild, -clustalw-2.0.12.ebuild:
+ Drop old and clean base.eclass usage
11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
Drop Andrey as maintainer so that bugs get assigned to sci-biology directly
diff --git a/sci-biology/clustalw/clustalw-1.83-r2.ebuild b/sci-biology/clustalw/clustalw-1.83-r2.ebuild
deleted file mode 100644
index 75a0f6c4d7e0..000000000000
--- a/sci-biology/clustalw/clustalw-1.83-r2.ebuild
+++ /dev/null
@@ -1,36 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalw/clustalw-1.83-r2.ebuild,v 1.4 2009/08/18 17:24:32 weaver Exp $
-
-inherit toolchain-funcs
-
-DESCRIPTION="General purpose multiple alignment program for DNA and proteins"
-HOMEPAGE="http://www.embl-heidelberg.de/~seqanal/"
-SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/unix/clustalw/${PN}${PV}.UNIX.tar.gz"
-
-LICENSE="clustalw"
-SLOT="1"
-KEYWORDS="alpha amd64 ppc ppc64 sparc x86"
-IUSE=""
-
-S="${WORKDIR}"/${PN}${PV}
-
-src_unpack() {
- unpack ${A}
- cd "${S}"
- sed -i -e "s/CC = cc/CC = $(tc-getCC)/" \
- -e "s/CFLAGS = -c -O/CFLAGS = -c ${CFLAGS}/" \
- -e "s/LFLAGS = -O -lm/LFLAGS = -lm ${CFLAGS}/" makefile || die
- sed -i -e "s%clustalw_help%/usr/share/doc/${PF}/clustalw_help%" clustalw.c || die
-}
-
-src_compile() {
- emake || die
-}
-
-src_install() {
- dobin clustalw || die
- dodoc README clustalv.doc clustalw.doc clustalw.ms
- insinto /usr/share/doc/${PF}
- doins clustalw_help
-}
diff --git a/sci-biology/clustalw/clustalw-1.83-r3.ebuild b/sci-biology/clustalw/clustalw-1.83-r3.ebuild
deleted file mode 100644
index 8b2fd36e6ec7..000000000000
--- a/sci-biology/clustalw/clustalw-1.83-r3.ebuild
+++ /dev/null
@@ -1,36 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalw/clustalw-1.83-r3.ebuild,v 1.2 2010/01/02 18:31:12 fauli Exp $
-
-EAPI="2"
-
-inherit base toolchain-funcs
-
-DESCRIPTION="General purpose multiple alignment program for DNA and proteins"
-HOMEPAGE="http://www.embl-heidelberg.de/~seqanal/"
-SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/unix/clustalw/${PN}${PV}.UNIX.tar.gz"
-
-LICENSE="clustalw"
-SLOT="1"
-KEYWORDS="~alpha ~amd64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris"
-IUSE=""
-
-S="${WORKDIR}"/${PN}${PV}
-
-PATCHES=(
- "${FILESDIR}"/${PV}-as-needed.patch
-)
-
-src_prepare() {
- base_src_prepare
- sed -i -e "s/CC = cc/CC = $(tc-getCC)/" \
- makefile || die
- sed -i -e "s%clustalw_help%/usr/share/doc/${PF}/clustalw_help%" clustalw.c || die
-}
-
-src_install() {
- dobin clustalw || die
- dodoc README clustalv.doc clustalw.doc clustalw.ms
- insinto /usr/share/doc/${PF}
- doins clustalw_help
-}
diff --git a/sci-biology/clustalw/clustalw-2.0.11.ebuild b/sci-biology/clustalw/clustalw-2.0.11.ebuild
deleted file mode 100644
index 18b0c6b68ef0..000000000000
--- a/sci-biology/clustalw/clustalw-2.0.11.ebuild
+++ /dev/null
@@ -1,18 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalw/clustalw-2.0.11.ebuild,v 1.3 2009/09/22 11:37:55 maekke Exp $
-
-EAPI=2
-
-DESCRIPTION="General purpose multiple alignment program for DNA and proteins"
-HOMEPAGE="http://www.clustal.org/"
-SRC_URI="http://www.clustal.org/download/current/${P}.tar.gz"
-
-LICENSE="clustalw"
-SLOT="2"
-KEYWORDS="amd64 x86"
-IUSE=""
-
-src_install() {
- einstall || die "Installation failed."
-}
diff --git a/sci-biology/clustalw/clustalw-2.0.12.ebuild b/sci-biology/clustalw/clustalw-2.0.12.ebuild
deleted file mode 100644
index 4ea2168b54f7..000000000000
--- a/sci-biology/clustalw/clustalw-2.0.12.ebuild
+++ /dev/null
@@ -1,18 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalw/clustalw-2.0.12.ebuild,v 1.2 2010/01/01 21:32:10 fauli Exp $
-
-EAPI=2
-
-DESCRIPTION="General purpose multiple alignment program for DNA and proteins"
-HOMEPAGE="http://www.clustal.org/"
-SRC_URI="http://www.clustal.org/download/current/${P}.tar.gz"
-
-LICENSE="clustalw"
-SLOT="2"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris"
-IUSE=""
-
-src_install() {
- einstall || die "Installation failed."
-}