Added support for the "emboss" and "minimal" "USE" flags.

(Portage version: 2.0.51.16)

6 files changed, 29 insertions, 57 deletions

diff --git a/sci-biology/aaindex/ChangeLog b/sci-biology/aaindex/ChangeLog
index 83ec934591c1..8e8044e0e6f3 100644
--- a/sci-biology/aaindex/ChangeLog
+++ b/sci-biology/aaindex/ChangeLog
@@ -1,6 +1,9 @@
 # ChangeLog for sci-biology/aaindex
 # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/aaindex/ChangeLog,v 1.3 2005/01/14 22:47:33 j4rg0n Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/aaindex/ChangeLog,v 1.4 2005/02/23 03:59:50 ribosome Exp $
+
+  22 Feb 2005; Olivier Fisette <ribosome@gentoo.org> aaindex-6.0.ebuild:
+  Added support for the "emboss" and "minimal" "USE" flags.
 
   14 Jan 2005; Lina Pezzella <j4rg0n@gentoo.org> aaindex-6.0.ebuild:
   Stable ppc-macos.
diff --git a/sci-biology/aaindex/aaindex-6.0.ebuild b/sci-biology/aaindex/aaindex-6.0.ebuild
index 5bd319ddde9c..62e5995d2f45 100644
--- a/sci-biology/aaindex/aaindex-6.0.ebuild
+++ b/sci-biology/aaindex/aaindex-6.0.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2005 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/aaindex/aaindex-6.0.ebuild,v 1.3 2005/01/14 22:47:33 j4rg0n Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/aaindex/aaindex-6.0.ebuild,v 1.4 2005/02/23 03:59:50 ribosome Exp $
 
 DESCRIPTION="Amino acid indices and similarity matrices"
 HOMEPAGE="http://www.genome.ad.jp/aaindex"
@@ -12,32 +12,36 @@ SRC_URI="ftp://ftp.genome.ad.jp/pub/db/genomenet/${PN}/${PN}.doc
 LICENSE="public-domain"
 SLOT="0"
 KEYWORDS="x86 ~ppc ppc-macos"
-IUSE="no-emboss no-rawdb"
+IUSE="emboss minimal"
+# Minimal build keeps only the indexed files (if applicable) and the documentation.
+# The non-indexed database is not installed.
 
 S=${WORKDIR}
 
 src_unpack() {
+	echo
 	einfo "No archive to unpack."
+	echo
 }
 
 src_compile() {
-	# Index the database for use with emboss if emboss is installed and
-	# the user did not explicitly request not to index the database.
-	if [ -e /usr/bin/aaindexextract ] && ! use no-emboss; then
+	if use emboss; then
 		mkdir AAINDEX
+		echo
 		einfo "Indexing AAindex for usage with EMBOSS."
 		EMBOSS_DATA=. aaindexextract -auto -infile ${DISTDIR}/${PN}1 || die \
 			"Indexing AAindex failed."
+		echo
 	fi
 }
 
 src_install() {
-	if ! use no-rawdb; then
+	if ! use minimal; then
 		insinto /usr/share/${PN}
 		doins ${DISTDIR}/{${PN}{1,2},list_of_{matrices,indices}}
 	fi
 	dodoc ${DISTDIR}/${PN}.doc
-	if [ -e /usr/bin/aaindexextract ] && ! use no-emboss; then
+	if use emboss; then
 		insinto /usr/share/EMBOSS/data/AAINDEX
 		doins AAINDEX/*
 	fi
diff --git a/sci-biology/cutg/ChangeLog b/sci-biology/cutg/ChangeLog
index abd14fc0ed05..2a9c99889d90 100644
--- a/sci-biology/cutg/ChangeLog
+++ b/sci-biology/cutg/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/cutg
 # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.6 2005/02/02 21:24:46 j4rg0n Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.7 2005/02/23 04:04:17 ribosome Exp $
+
+  22 Feb 2005; Olivier Fisette <ribosome@gentoo.org> -cutg-143.ebuild,
+  cutg-144.ebuild:
+  Added support for the "emboss" and "minimal" "USE" flags.
 
   02 Feb 2005; Lina Pezzella <j4rg0n@gentoo.org> cutg-144.ebuild:
   Stable ppc-macos
diff --git a/sci-biology/cutg/cutg-143.ebuild b/sci-biology/cutg/cutg-143.ebuild
deleted file mode 100644
index 77a02d91a74a..000000000000
--- a/sci-biology/cutg/cutg-143.ebuild
+++ /dev/null
@@ -1,40 +0,0 @@
-# Copyright 1999-2005 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-143.ebuild,v 1.2 2005/01/01 13:05:19 corsair Exp $
-
-DESCRIPTION="Codon usage tables calculated from GenBank"
-HOMEPAGE="http://www.kazusa.or.jp/codon/"
-SRC_URI="ftp://ftp.kazusa.or.jp/pub/codon/current/compressed/CUTG.${PV}.tar.gz"
-LICENSE="public-domain"
-
-SLOT="0"
-KEYWORDS="x86 ~ppc"
-IUSE="no-emboss no-rawdb"
-
-S=${WORKDIR}
-
-src_compile() {
-	# Index the database for use with emboss if emboss is installed and
-	# the user did not explicitly request not to index the database.
-	if [ -e /usr/bin/cutgextract ] && ! use no-emboss; then
-		mkdir CODONS
-		einfo "Indexing CUTG for usage with EMBOSS."
-		EMBOSS_DATA=. cutgextract -auto -directory ${S} || die \
-			"Indexing CUTG failed."
-	fi
-}
-
-src_install() {
-	if ! use no-rawdb; then
-		mkdir -p ${D}/usr/share/${PN}
-		mv *.codon *.spsum ${D}/usr/share/${PN}
-	fi
-	dodoc README
-	if [ -e /usr/bin/cutgextract ] && ! use no-emboss; then
-		mkdir -p ${D}/usr/share/EMBOSS/data/CODONS
-		cd CODONS
-		for file in *; do
-			mv ${file} ${D}/usr/share/EMBOSS/data/CODONS
-		done
-	fi
-}
diff --git a/sci-biology/cutg/cutg-144.ebuild b/sci-biology/cutg/cutg-144.ebuild
index a7402d0b784a..6c9048b77e65 100644
--- a/sci-biology/cutg/cutg-144.ebuild
+++ b/sci-biology/cutg/cutg-144.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2005 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-144.ebuild,v 1.5 2005/02/02 21:24:46 j4rg0n Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-144.ebuild,v 1.6 2005/02/23 04:04:17 ribosome Exp $
 
 DESCRIPTION="Codon usage tables calculated from GenBank"
 HOMEPAGE="http://www.kazusa.or.jp/codon/"
@@ -9,28 +9,30 @@ LICENSE="public-domain"
 
 SLOT="0"
 KEYWORDS="x86 ~ppc ppc-macos ~ppc64"
-IUSE="no-emboss no-rawdb"
+IUSE="emboss minimal"
+# Minimal build keeps only the indexed files (if applicable) and the documentation.
+# The non-indexed database is not installed.
 
 S=${WORKDIR}
 
 src_compile() {
-	# Index the database for use with emboss if emboss is installed and
-	# the user did not explicitly request not to index the database.
-	if [ -e /usr/bin/cutgextract ] && ! use no-emboss; then
+	if use emboss; then
 		mkdir CODONS
+		echo
 		einfo "Indexing CUTG for usage with EMBOSS."
 		EMBOSS_DATA=. cutgextract -auto -directory ${S} || die \
 			"Indexing CUTG failed."
+		echo
 	fi
 }
 
 src_install() {
-	if ! use no-rawdb; then
+	if ! use minimal; then
 		mkdir -p ${D}/usr/share/${PN}
 		mv *.codon *.spsum ${D}/usr/share/${PN}
 	fi
 	dodoc README
-	if [ -e /usr/bin/cutgextract ] && ! use no-emboss; then
+	if use emboss; then
 		mkdir -p ${D}/usr/share/EMBOSS/data/CODONS
 		cd CODONS
 		for file in *; do
diff --git a/sci-biology/cutg/files/digest-cutg-143 b/sci-biology/cutg/files/digest-cutg-143
deleted file mode 100644
index 55572f7df18e..000000000000
--- a/sci-biology/cutg/files/digest-cutg-143
+++ /dev/null
@@ -1 +0,0 @@
-MD5 8f3ccb3c31e1383ac987d8e46c9f5610 CUTG.143.tar.gz 117357602