Cleaned old

(Portage version: 2.2.0_alpha81/cvs/Linux x86_64)

3 files changed, 5 insertions, 105 deletions

diff --git a/sci-biology/velvet/ChangeLog b/sci-biology/velvet/ChangeLog
index 87b139a7cf8c..be83cb2ac028 100644
--- a/sci-biology/velvet/ChangeLog
+++ b/sci-biology/velvet/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/velvet
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v 1.18 2011/12/21 09:02:55 phajdan.jr Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v 1.19 2011/12/21 09:14:57 jlec Exp $
+
+  21 Dec 2011; Justin Lecher <jlec@gentoo.org> -velvet-0.7.55.ebuild,
+  -velvet-0.7.62.ebuild:
+  Cleaned old
 
   21 Dec 2011; Pawel Hajdan jr <phajdan.jr@gentoo.org> velvet-1.0.18-r1.ebuild:
   x86 stable wrt bug #393981
diff --git a/sci-biology/velvet/velvet-0.7.55.ebuild b/sci-biology/velvet/velvet-0.7.55.ebuild
deleted file mode 100644
index c8db26a834d6..000000000000
--- a/sci-biology/velvet/velvet-0.7.55.ebuild
+++ /dev/null
@@ -1,53 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/velvet-0.7.55.ebuild,v 1.4 2009/10/31 17:57:32 maekke Exp $
-
-EAPI="2"
-
-MY_P="${PN}_${PV}"
-
-DESCRIPTION="A sequence assembler for very short reads"
-HOMEPAGE="http://www.ebi.ac.uk/~zerbino/velvet/"
-SRC_URI="http://www.ebi.ac.uk/~zerbino/velvet/${MY_P}.tgz"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE="-doc"
-KEYWORDS="amd64 x86"
-
-DEPEND="doc? ( virtual/latex-base )"
-RDEPEND=""
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
-	rm -rf "${S}"/third-party/zlib*
-	sed -i -e '/\(CFLAGS\|LDFLAGS\|Z_LIB_DIR\|Z_LIB_FILES\) *= */d' \
-		-e '1 a CFLAGS+= -Wall' -e '1 a LDFLAGS+= -lm -lz' \
-		-e '/default :/ s/zlib//' -e '/color :/ s/zlib//' \
-		"${S}"/Makefile || die
-	use doc || sed -i -e '/default :/ s/doc//' "${S}"/Makefile || die
-	sed -i -e '/zlib.h/d' -e '1 i #include <zlib.h>' "${S}"/src/readSet.c || die
-}
-
-src_compile() {
-	MAKE_XOPTS=""
-	if [[ $VELVET_MAXKMERLENGTH != "" ]]; then MAKE_XOPTS="$MAKE_XOPTS MAXKMERLENGTH=$VELVET_MAXKMERLENGTH"; fi
-	if [[ $VELVET_CATEGORIES != "" ]]; then MAKE_XOPTS="$MAKE_XOPTS CATEGORIES=$VELVET_CATEGORIES"; fi
-	emake -j1 $MAKE_XOPTS || die
-	emake -j1 $MAKE_XOPTS color || die
-}
-
-src_install() {
-	dobin velvet{g,h,g_de,h_de} || die
-	insinto /usr/share/${PN}
-	doins -r contrib || die
-	dodoc Manual.pdf CREDITS.txt
-}
-
-pkg_postinst() {
-	elog "To adjust the MAXKMERLENGTH or CATEGORIES parameters as described in the manual,"
-	elog "please set the variables VELVET_MAXKMERLENGTH or VELVET_CATEGORIES in your"
-	elog "environment or /etc/make.conf, then re-emerge the package. For example:"
-	elog "	VELVET_MAXKMERLENGTH=NN emerge [options] velvet"
-}
diff --git a/sci-biology/velvet/velvet-0.7.62.ebuild b/sci-biology/velvet/velvet-0.7.62.ebuild
deleted file mode 100644
index e59dadf22291..000000000000
--- a/sci-biology/velvet/velvet-0.7.62.ebuild
+++ /dev/null
@@ -1,51 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/velvet-0.7.62.ebuild,v 1.2 2010/06/20 18:05:05 xarthisius Exp $
-
-EAPI="2"
-
-inherit eutils toolchain-funcs
-
-MY_P=${PN}_${PV}
-
-DESCRIPTION="A sequence assembler for very short reads"
-HOMEPAGE="http://www.ebi.ac.uk/~zerbino/velvet/"
-SRC_URI="http://www.ebi.ac.uk/~zerbino/velvet/${MY_P}.tgz"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE="-doc"
-KEYWORDS="~amd64 ~x86"
-
-DEPEND="doc? ( virtual/latex-base )"
-RDEPEND=""
-
-S=${WORKDIR}/${MY_P}
-
-src_prepare() {
-	epatch "${FILESDIR}"/${P}-gentoo.diff
-	use doc || sed -i -e '/default :/ s/doc//' "${S}"/Makefile || die
-}
-
-src_compile() {
-	tc-export CC
-	MAKE_XOPTS=""
-	if [[ $VELVET_MAXKMERLENGTH != "" ]]; then MAKE_XOPTS="$MAKE_XOPTS MAXKMERLENGTH=$VELVET_MAXKMERLENGTH"; fi
-	if [[ $VELVET_CATEGORIES != "" ]]; then MAKE_XOPTS="$MAKE_XOPTS CATEGORIES=$VELVET_CATEGORIES"; fi
-	emake $MAKE_XOPTS || die
-	emake $MAKE_XOPTS color || die
-}
-
-src_install() {
-	dobin velvet{g,h,g_de,h_de} || die
-	insinto /usr/share/${PN}
-	doins -r contrib || die
-	dodoc Manual.pdf CREDITS.txt ChangeLog || die
-}
-
-pkg_postinst() {
-	elog "To adjust the MAXKMERLENGTH or CATEGORIES parameters as described in the manual,"
-	elog "please set the variables VELVET_MAXKMERLENGTH or VELVET_CATEGORIES in your"
-	elog "environment or /etc/make.conf, then re-emerge the package. For example:"
-	elog "	VELVET_MAXKMERLENGTH=NN emerge [options] velvet"
-}