Fixed a number of issues, removed buggy ebuild.

(Portage version: 2.1.1)
 (Unsigned Manifest commit)

3 files changed, 12 insertions, 62 deletions

diff --git a/sci-biology/emboss-kaptain/Manifest b/sci-biology/emboss-kaptain/Manifest
index 2cd80456bea2..23b1047596f4 100644
--- a/sci-biology/emboss-kaptain/Manifest
+++ b/sci-biology/emboss-kaptain/Manifest
@@ -1,16 +1,16 @@
-DIST EMBOSS.kaptns_0.97.tar.gz 149263
-EBUILD emboss-kaptain-0.97-r1.ebuild 1347 RMD160 70392e13aa5cbc9395bf3d64c85046bea122db38 SHA1 d786e6229763ad038f8622a4634ba89b331fa009 SHA256 2773b72b3480de8338bd2f76d4b0fc653a3a44e59d4b34c331fbb59f8de3b8de
-MD5 31bb030b7f3ffe010cd6263731c70caa emboss-kaptain-0.97-r1.ebuild 1347
-RMD160 70392e13aa5cbc9395bf3d64c85046bea122db38 emboss-kaptain-0.97-r1.ebuild 1347
-SHA256 2773b72b3480de8338bd2f76d4b0fc653a3a44e59d4b34c331fbb59f8de3b8de emboss-kaptain-0.97-r1.ebuild 1347
-MISC ChangeLog 1153 RMD160 0c89b7413893c1dd4b83643d1a57b3c0ef36cecb SHA1 1633ec3d35830074e0ce41d7c7366559cc197589 SHA256 9cf21efb1d9bc3fd73b62ac100e1207339005e1c0fa87f6fa801b7696ec86617
-MD5 57ebb41aa710b14d01f0a50550db6eae ChangeLog 1153
-RMD160 0c89b7413893c1dd4b83643d1a57b3c0ef36cecb ChangeLog 1153
-SHA256 9cf21efb1d9bc3fd73b62ac100e1207339005e1c0fa87f6fa801b7696ec86617 ChangeLog 1153
+DIST EMBOSS.kaptns_0.97.tar.gz 149263 RMD160 638c619bcc96bf093089c62d4d121636099711ee SHA1 8bb46bd72f3280ca8d5dbb0d27f06563fb5ade22 SHA256 53f08edfbd2b924657db69d66458b5ae07226e1570864680fc0d4257cd71a656
+EBUILD emboss-kaptain-0.97-r2.ebuild 2993 RMD160 ddb8d5cf62562c6f9ad1ec9a1754465f164e269b SHA1 a633e4fb0d8a4cee7b6680979a308d713a2cae10 SHA256 0a1b4e694293c89e9fd1acc091043cdf6189fe970aead09917b9e24f45bf824b
+MD5 5e3896759c00a523986e20217d789a2c emboss-kaptain-0.97-r2.ebuild 2993
+RMD160 ddb8d5cf62562c6f9ad1ec9a1754465f164e269b emboss-kaptain-0.97-r2.ebuild 2993
+SHA256 0a1b4e694293c89e9fd1acc091043cdf6189fe970aead09917b9e24f45bf824b emboss-kaptain-0.97-r2.ebuild 2993
+MISC ChangeLog 1528 RMD160 39d23022f2dba40231284445830127175cd6c31b SHA1 41e1425d7662570f9b23ba0fd9b5dd50738ae8e1 SHA256 3b1445b11b4a36d94fe9a0c8ac2f2c5d29dfe33fe71017de1f7eb6f2c14bf10b
+MD5 378a80e438b7533e6332f7e5301235f6 ChangeLog 1528
+RMD160 39d23022f2dba40231284445830127175cd6c31b ChangeLog 1528
+SHA256 3b1445b11b4a36d94fe9a0c8ac2f2c5d29dfe33fe71017de1f7eb6f2c14bf10b ChangeLog 1528
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
 MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
-MD5 25e58e7c514be03e50f128e66179551d files/digest-emboss-kaptain-0.97-r1 70
-RMD160 ceafce03bec24673eeb7e9f58f12eb3346304fb3 files/digest-emboss-kaptain-0.97-r1 70
-SHA256 01ddc9a165d913ca967a8cd952f1e8984203f05f0d46f5e5cf907957095b7e57 files/digest-emboss-kaptain-0.97-r1 70
+MD5 a7ea5060193af38556e748d1883ca15a files/digest-emboss-kaptain-0.97-r2 256
+RMD160 e29640dd12c3409271538b69eab8767a5da8c672 files/digest-emboss-kaptain-0.97-r2 256
+SHA256 ce01f40d1566504d883e4612719f9db5dc4af23e0bdc32eaf801dec88a683721 files/digest-emboss-kaptain-0.97-r2 256
diff --git a/sci-biology/emboss-kaptain/emboss-kaptain-0.97-r1.ebuild b/sci-biology/emboss-kaptain/emboss-kaptain-0.97-r1.ebuild
deleted file mode 100644
index 98e89ea8a1d2..000000000000
--- a/sci-biology/emboss-kaptain/emboss-kaptain-0.97-r1.ebuild
+++ /dev/null
@@ -1,49 +0,0 @@
-# Copyright 1999-2005 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss-kaptain/emboss-kaptain-0.97-r1.ebuild,v 1.1 2005/05/10 04:21:56 ribosome Exp $
-
-DESCRIPTION="Graphical interfaces for EMBOSS and EMBASSY programs"
-HOMEPAGE="http://userpage.fu-berlin.de/~sgmd/"
-SRC_URI="http://genetik.fu-berlin.de/sgmd/EMBOSS.kaptns_${PV}.tar.gz"
-LICENSE="GPL-1"
-
-SLOT="0"
-KEYWORDS="x86"
-IUSE=""
-
-S=${WORKDIR}/EMBOSS.kaptns_${PV}
-
-DEPEND="kde-misc/kaptain
-	app-editors/nedit
-	sci-biology/emboss
-	sci-biology/embassy-phylip
-	sci-biology/embassy-domainatrix"
-
-src_compile() {
-	for i in *.kaptn; do
-		sed -e 's/nc -noask/neditc -noask/' \
-			-e 's/nc -svrname/neditc -svrname/' -i ${i} || die
-	done
-	cd EMBOSS
-	for i in *; do
-		cd "${i}"
-		for j in *.desktop; do
-			sed -i -e 's%Exec=%Exec=kaptain /usr/share/emboss-kaptain/%' ${j} \
-				|| die
-		done
-		cd ${S}/EMBOSS
-	done
-	cd ${S}/Domainatrix/Domainatrix
-	for i in *.desktop; do
-		sed -i -e 's%Exec=%Exec=kaptain /usr/share/emboss-kaptain/%' ${i} || die
-	done
-}
-
-src_install() {
-	exeinto /usr/share/${PN}
-	doexe *.kaptn
-	doexe Domainatrix/*.kaptn
-	mkdir -p ${D}/usr/share/applnk/EMBOSS/Domainatrix
-	cp -r EMBOSS/* ${D}/usr/share/applnk/EMBOSS
-	cp -r Domainatrix/Domainatrix/* ${D}/usr/share/applnk/EMBOSS/Domainatrix
-}
diff --git a/sci-biology/emboss-kaptain/files/digest-emboss-kaptain-0.97-r1 b/sci-biology/emboss-kaptain/files/digest-emboss-kaptain-0.97-r1
deleted file mode 100644
index fda1b194fbf7..000000000000
--- a/sci-biology/emboss-kaptain/files/digest-emboss-kaptain-0.97-r1
+++ /dev/null
@@ -1 +0,0 @@
-MD5 ebd469f76629503ced882811e8b4568b EMBOSS.kaptns_0.97.tar.gz 149263