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authorAndrey Kislyuk <weaver@gentoo.org>2011-10-02 20:04:57 +0000
committerAndrey Kislyuk <weaver@gentoo.org>2011-10-02 20:04:57 +0000
commitf7ee256644d5cf45c744d3e6e9aa95b8382ade8d (patch)
treee50058d5132968efddd72fc5c528b497a981e477 /sci-biology
parent[net-wireless/madwimax] It works on ~arm (tm) (diff)
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New package, ebuild written by me
(Portage version: 2.2.0_alpha45/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/vcftools/ChangeLog10
-rw-r--r--sci-biology/vcftools/metadata.xml9
-rw-r--r--sci-biology/vcftools/vcftools-0.1.6.ebuild32
3 files changed, 51 insertions, 0 deletions
diff --git a/sci-biology/vcftools/ChangeLog b/sci-biology/vcftools/ChangeLog
new file mode 100644
index 000000000000..6f16022dd050
--- /dev/null
+++ b/sci-biology/vcftools/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/vcftools
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vcftools/ChangeLog,v 1.1 2011/10/02 20:04:57 weaver Exp $
+
+*vcftools-0.1.6 (02 Oct 2011)
+
+ 02 Oct 2011; Andrey Kislyuk <weaver@gentoo.org> +vcftools-0.1.6.ebuild,
+ +metadata.xml:
+ New package, ebuild written by me
+
diff --git a/sci-biology/vcftools/metadata.xml b/sci-biology/vcftools/metadata.xml
new file mode 100644
index 000000000000..3302123e5718
--- /dev/null
+++ b/sci-biology/vcftools/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer>
+ <email>weaver@gentoo.org</email>
+ <name>Andrey Kislyuk</name>
+ </maintainer>
+ <herd>sci-biology</herd>
+</pkgmetadata>
diff --git a/sci-biology/vcftools/vcftools-0.1.6.ebuild b/sci-biology/vcftools/vcftools-0.1.6.ebuild
new file mode 100644
index 000000000000..e8caa0fb35fc
--- /dev/null
+++ b/sci-biology/vcftools/vcftools-0.1.6.ebuild
@@ -0,0 +1,32 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vcftools/vcftools-0.1.6.ebuild,v 1.1 2011/10/02 20:04:57 weaver Exp $
+
+EAPI=4
+
+MY_P="${PN}_${PV}"
+
+DESCRIPTION="Tools for working with VCF (Variant Call Format) files"
+HOMEPAGE="http://vcftools.sourceforge.net/"
+SRC_URI="mirror://sourceforge/${PN}/${MY_P}.tar.gz"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~x86 ~amd64"
+IUSE=""
+
+S="${WORKDIR}/${MY_P}"
+
+src_prepare() {
+ sed -i -e "s/CPPFLAGS =/CPPFLAGS = $CXXFLAGS /" \
+ -e "s/LIB =/LIB = $LDFLAGS /" cpp/Makefile || die
+}
+
+src_install(){
+ dobin bin/*
+ insinto /usr/share/${PN}/perl
+ doins perl/*.pm
+ exeinto /usr/share/${PN}/perl
+ doexe perl/{fill,vcf}-*
+ dodoc README.txt
+}