sci-chemistry/apbs: Remove redundant python dir after installation

(Portage version: 2.2.14/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)

2 files changed, 132 insertions, 1 deletions

diff --git a/sci-chemistry/apbs/ChangeLog b/sci-chemistry/apbs/ChangeLog
index 8d497d360009..256bd9b03968 100644
--- a/sci-chemistry/apbs/ChangeLog
+++ b/sci-chemistry/apbs/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-chemistry/apbs
 # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/ChangeLog,v 1.69 2014/10/30 07:30:54 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/ChangeLog,v 1.70 2014/10/30 11:52:05 jlec Exp $
+
+*apbs-1.4.1-r2 (30 Oct 2014)
+
+  30 Oct 2014; Justin Lecher <jlec@gentoo.org> +apbs-1.4.1-r2.ebuild:
+  Remove redundant python dir after installation
 
   30 Oct 2014; Justin Lecher <jlec@gentoo.org> apbs-1.4.1-r1.ebuild:
   Fix build problems, #527344
diff --git a/sci-chemistry/apbs/apbs-1.4.1-r2.ebuild b/sci-chemistry/apbs/apbs-1.4.1-r2.ebuild
new file mode 100644
index 000000000000..c7e432777f37
--- /dev/null
+++ b/sci-chemistry/apbs/apbs-1.4.1-r2.ebuild
@@ -0,0 +1,126 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/apbs-1.4.1-r2.ebuild,v 1.1 2014/10/30 11:52:05 jlec Exp $
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit cmake-utils distutils-r1 flag-o-matic multilib toolchain-funcs
+
+GITHUB_REV="74fcb8676de69ed04ddab8976a8b05a6caaf4d65"
+
+DESCRIPTION="Evaluation of electrostatic properties of nanoscale biomolecular systems"
+HOMEPAGE="http://www.poissonboltzmann.org/apbs/"
+#SRC_URI="mirror://sourceforge/${PN}/${P}-source.tar.gz"
+SRC_URI="https://github.com/Electrostatics/apbs-pdb2pqr/archive/${GITHUB_REV}.zip -> ${P}.zip"
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
+IUSE="debug doc examples fast +fetk mpi openmp python tools"
+
+REQUIRED_USE="
+	mpi? ( !python )
+	python? ( tools fetk ${PYTHON_REQUIRED_USE} )"
+
+RDEPEND="
+	dev-cpp/eigen:3
+	dev-libs/maloc[mpi=]
+	virtual/blas
+	sys-libs/readline
+	fetk? (
+		sci-libs/fetk
+		sci-libs/amd
+		sci-libs/umfpack
+		sci-libs/superlu
+	)
+	mpi? ( virtual/mpi )
+	python? ( ${PYTHON_DEPS} )
+"
+DEPEND="${DEPEND}
+	virtual/pkgconfig
+	doc? ( app-doc/doxygen )
+"
+
+S="${WORKDIR}"/${PN}-pdb2pqr-${GITHUB_REV}/${PN}
+
+PATCHES=(
+	"${FILESDIR}"/${P}-multilib.patch
+	"${FILESDIR}"/${P}-manip.patch
+	"${FILESDIR}"/${P}-python.patch
+)
+
+src_prepare() {
+	cmake-utils_src_prepare
+	append-cppflags $($(tc-getPKG_CONFIG) --cflags eigen3)
+
+	sed \
+		-e "s:-lblas:$($(tc-getPKG_CONFIG) --libs blas):g" \
+		-e "/TOOLS_PATH/d" \
+		-i CMakeLists.txt || die
+	use doc && MAKEOPTS+=" -j1"
+	if use python; then
+		unset PATCHES || die
+		cd tools/python && distutils-r1_src_prepare
+	fi
+}
+
+src_configure() {
+	local mycmakeargs=(
+		-DCMAKE_SKIP_RPATH=ON
+		-DTOOLS_PATH="${ED}"/usr
+		-DSYS_LIBPATHS="${EPREFIX}"/usr/$(get_libdir)
+		-DLIBRARY_INSTALL_PATH=$(get_libdir)
+		-DFETK_PATH="${EPREFIX}"/usr/
+		-DBUILD_SHARED_LIBS=ON
+		-DENABLE_QUIT=OFF
+		$(cmake-utils_use_build doc DOC)
+		$(cmake-utils_use_build tools TOOLS)
+		-DENABLE_BEM=OFF
+# ENABLE_BEM: Boundary element method using TABIPB
+		$(cmake-utils_use_enable debug DEBUG)
+		$(cmake-utils_use_enable debug VERBOSE_DEBUG)
+		$(cmake-utils_use_enable fast FAST)
+		$(cmake-utils_use_enable fetk FETK)
+		$(cmake-utils_use_enable mpi MPI)
+		$(cmake-utils_use_enable python PYTHON)
+# ENABLE_TINKER: Enable TINKER support
+# ENABLE_iAPBS: Enable iAPBS
+		-DENABLE_iAPBS=ON
+# MAX_MEMORY: Set the maximum memory (in MB) to be used for a job
+	)
+	cmake-utils_src_configure
+	if use python; then
+		cd tools/python && distutils-r1_src_configure
+	fi
+}
+
+src_compile(){
+	cmake-utils_src_compile
+	if use python; then
+		append-ldflags -L"${S}"/lib
+		cd tools/python && distutils-r1_src_compile
+	fi
+}
+
+src_test() {
+	cd tests || die
+	"${PYTHON}" apbs_tester.py -l log || die
+	grep -q 'FAILED' log && die "Tests failed"
+}
+
+src_install() {
+	dodir /usr/bin
+	cmake-utils_src_install
+	local i
+	for i in "${ED}"/usr/bin/*; do
+		if [[ ! "${i}" =~ .*apbs$ ]]; then
+			mv "${i}" "${i}-apbs" || die
+		fi
+	done
+	if use python; then
+		cd tools/python && distutils-r1_src_install
+		rm -rf "${ED}"/usr/share/apbs/tools/python || die
+	fi
+}