sci-chemistry/chemical-mime-data: Fix for sandbox violation, #464782; Add missing deps; Bump to EAPI=5 and autotools-utils eclass; fix compatibility to pigz[symlink]; call fdo-mime function in pkg_postrm

(Portage version: 2.2.0_alpha183/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)

6 files changed, 168 insertions, 8 deletions

diff --git a/sci-chemistry/chemical-mime-data/ChangeLog b/sci-chemistry/chemical-mime-data/ChangeLog
index 23acedae4626..ce1ba410651a 100644
--- a/sci-chemistry/chemical-mime-data/ChangeLog
+++ b/sci-chemistry/chemical-mime-data/ChangeLog
@@ -1,6 +1,17 @@
 # ChangeLog for sci-chemistry/chemical-mime-data
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/chemical-mime-data/ChangeLog,v 1.7 2013/06/19 03:58:07 bicatali Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/chemical-mime-data/ChangeLog,v 1.8 2013/06/20 19:04:07 jlec Exp $
+
+*chemical-mime-data-0.1.94-r2 (20 Jun 2013)
+
+  20 Jun 2013; Justin Lecher <jlec@gentoo.org>
+  +chemical-mime-data-0.1.94-r2.ebuild,
+  +files/chemical-mime-data-0.1.94-namespace-svg.patch,
+  +files/chemical-mime-data-0.1.94-pigz.patch,
+  +files/chemical-mime-data-0.1.94-turbomole.patch, metadata.xml:
+  Fix for sandbox violation, #464782; Add missing deps; Bump to EAPI=5 and
+  autotools-utils eclass; fix compatibility to pigz[symlink]; call fdo-mime
+  function in pkg_postrm
 
   19 Jun 2013; Sébastien Fabbro <bicatali@gentoo.org> metadata.xml:
   Changed herd to sci-chemistry
diff --git a/sci-chemistry/chemical-mime-data/chemical-mime-data-0.1.94-r2.ebuild b/sci-chemistry/chemical-mime-data/chemical-mime-data-0.1.94-r2.ebuild
new file mode 100644
index 000000000000..0ef2b4e3d412
--- /dev/null
+++ b/sci-chemistry/chemical-mime-data/chemical-mime-data-0.1.94-r2.ebuild
@@ -0,0 +1,61 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/chemical-mime-data/chemical-mime-data-0.1.94-r2.ebuild,v 1.1 2013/06/20 19:04:07 jlec Exp $
+
+EAPI=5
+
+AUTOTOOLS_AUTORECONF=true
+
+inherit autotools-utils fdo-mime
+
+DESCRIPTION="A collection of data files to add support for chemical MIME types."
+HOMEPAGE="http://chemical-mime.sourceforge.net/"
+SRC_URI="mirror://sourceforge/${PN/-data/}/${P}.tar.bz2"
+
+LICENSE="LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RDEPEND="
+	gnome-base/gnome-mime-data
+	x11-misc/shared-mime-info"
+DEPEND="${RDEPEND}
+	dev-util/intltool
+	dev-util/desktop-file-utils
+	dev-libs/libxslt
+	media-gfx/imagemagick[xml]
+	media-gfx/inkscape
+	virtual/pkgconfig"
+
+PATCHES=(
+	"${FILESDIR}"/${P}-turbomole.patch
+	"${FILESDIR}"/${P}-pigz.patch
+	"${FILESDIR}"/${P}-namespace-svg.patch
+	)
+
+src_prepare() {
+	# needed for convert/inkscape #464782
+	export XDG_CONFIG_HOME=$HOME/.config
+	autotools-utils_src_prepare
+}
+
+src_configure() {
+	local myeconfargs=(
+		--disable-update-database
+		--htmldir=/usr/share/doc/${PF}/html
+		)
+	autotools-utils_src_configure
+}
+
+pkg_postinst() {
+	fdo-mime_desktop_database_update
+	fdo-mime_mime_database_update
+	ewarn "You can ignore any 'Unknown media type in type' warnings."
+}
+
+pkg_postrm() {
+	fdo-mime_desktop_database_update
+	fdo-mime_mime_database_update
+	ewarn "You can ignore any 'Unknown media type in type' warnings."
+}
diff --git a/sci-chemistry/chemical-mime-data/files/chemical-mime-data-0.1.94-namespace-svg.patch b/sci-chemistry/chemical-mime-data/files/chemical-mime-data-0.1.94-namespace-svg.patch
new file mode 100644
index 000000000000..9860261af403
--- /dev/null
+++ b/sci-chemistry/chemical-mime-data/files/chemical-mime-data-0.1.94-namespace-svg.patch
@@ -0,0 +1,16 @@
+ icons/hicolor/gnome-mime-chemical.svg | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/icons/hicolor/gnome-mime-chemical.svg b/icons/hicolor/gnome-mime-chemical.svg
+index 1a8d428..804514c 100644
+--- a/icons/hicolor/gnome-mime-chemical.svg
++++ b/icons/hicolor/gnome-mime-chemical.svg
+@@ -5,7 +5,7 @@
+ 	<!ENTITY ns_svg "http://www.w3.org/2000/svg">
+ 	<!ENTITY ns_xlink "http://www.w3.org/1999/xlink">
+ ]>
+-<svg  xmlns="&ns_svg;" xmlns:xlink="&ns_xlink;" xmlns:a="http://ns.adobe.com/AdobeSVGViewerExtensions/3.0/"
++<svg  xmlns:svg="&ns_svg;" xmlns:xlink="&ns_xlink;" xmlns:a="http://ns.adobe.com/AdobeSVGViewerExtensions/3.0/"
+ 	 width="128" height="128" viewBox="0 0 128 128" overflow="visible" enable-background="new 0 0 128 128" xml:space="preserve">
+ 	<g id="Layer_1">
+ 		<g>
diff --git a/sci-chemistry/chemical-mime-data/files/chemical-mime-data-0.1.94-pigz.patch b/sci-chemistry/chemical-mime-data/files/chemical-mime-data-0.1.94-pigz.patch
new file mode 100644
index 000000000000..8b5ccfbc3fd9
--- /dev/null
+++ b/sci-chemistry/chemical-mime-data/files/chemical-mime-data-0.1.94-pigz.patch
@@ -0,0 +1,16 @@
+ Makefile.am | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/Makefile.am b/Makefile.am
+index 96e03ab..ba0847a 100644
+--- a/icons/hicolor/Makefile.am
++++ b/icons/hicolor/Makefile.am
+@@ -21,7 +21,7 @@ icon_sizes   = 16 22 24 32 36 48 64 72 96 128 192
+ if BOOL_HICOLOR_THEME
+ 
+ .svg.svgz:
+-	gzip $< -c > $@
++	gzip -c $< > $@
+ 	for size in $(icon_sizes) ; do \
+ 		if test "x$(RSVG)" != "x" ; then \
+ 			$(RSVG) -w $${size} -h $${size} -f png $< $*_$${size}.png ; \
diff --git a/sci-chemistry/chemical-mime-data/files/chemical-mime-data-0.1.94-turbomole.patch b/sci-chemistry/chemical-mime-data/files/chemical-mime-data-0.1.94-turbomole.patch
new file mode 100644
index 000000000000..852d6b0605be
--- /dev/null
+++ b/sci-chemistry/chemical-mime-data/files/chemical-mime-data-0.1.94-turbomole.patch
@@ -0,0 +1,57 @@
+diff -up chemical-mime-data-0.1.94/src/chemical-mime-database.xml.in.turbomole chemical-mime-data-0.1.94/src/chemical-mime-database.xml.in
+--- chemical-mime-data-0.1.94/src/chemical-mime-database.xml.in.turbomole	2009-08-10 09:37:06.000000000 +0200
++++ chemical-mime-data-0.1.94/src/chemical-mime-database.xml.in	2009-08-10 09:40:57.000000000 +0200
+@@ -1290,7 +1290,7 @@
+ 		<specification url="http://ca.expasy.org/sprot/userman.html"/>
+ 	</mime-type>
+ 
+-	<mime-type type="chemical/x-turbomole-basis" support="no">
++	<mime-type type="chemical/x-turbomole-basis" support="yes">
+ 		<_comment>Turbomole Basis Set File</_comment>
+ 		<glob pattern="basis"/>
+ 		<sub-class-of type="text/plain"/>
+@@ -1304,7 +1304,7 @@
+ 		<specification url="http://www.cosmologic.de/data/DOK_HTML/"/>
+ 	</mime-type>
+ 
+-	<mime-type type="chemical/x-turbomole-control" support="no">
++	<mime-type type="chemical/x-turbomole-control" support="yes">
+ 		<_comment>Turbomole Control File</_comment>
+ 		<glob pattern="control"/>
+ 		<sub-class-of type="text/plain"/>
+@@ -1320,7 +1320,7 @@
+ 		<specification url="http://www.cosmologic.de/data/DOK_HTML/node230.html"/>
+ 	</mime-type>
+ 
+-	<mime-type type="chemical/x-turbomole-coord" support="no">
++	<mime-type type="chemical/x-turbomole-coord" support="yes">
+ 		<_comment>Turbomole Coordinate File</_comment>
+ 		<glob pattern="coord"/>
+ 		<glob pattern="*.tmol"/>
+@@ -1335,7 +1335,7 @@
+ 		<specification url="http://www.cosmologic.de/data/DOK_HTML/"/>
+ 	</mime-type>
+ 
+-	<mime-type type="chemical/x-turbomole-grad" support="no">
++	<mime-type type="chemical/x-turbomole-grad" support="yes">
+ 		<_comment>Turbomole Gradient File</_comment>
+ 		<glob pattern="gradient"/>
+ 		<sub-class-of type="text/plain"/>
+@@ -1383,7 +1383,7 @@
+ 		<specification url="http://www.cosmologic.de/data/DOK_HTML/"/>
+ 	</mime-type>
+ 
+-	<mime-type type="chemical/x-turbomole-scfmo" support="no">
++	<mime-type type="chemical/x-turbomole-scfmo" support="yes">
+ 		<_comment>Turbomole SCF Molecular Orbital File</_comment>
+ 		<acronym>MO</acronym>
+ 		<expanded-acronym>Molecular Orbital</expanded-acronym>
+@@ -1401,7 +1401,7 @@
+ 		<specification url="http://www.cosmologic.de/data/DOK_HTML/"/>
+ 	</mime-type>
+ 
+-	<mime-type type="chemical/x-turbomole-vibrational" support="no">
++	<mime-type type="chemical/x-turbomole-vibrational" support="yes">
+ 		<_comment>Turbomole Vibrational Data File</_comment>
+ 		<glob pattern="???"/>
+ 		<sub-class-of type="text/plain"/>
diff --git a/sci-chemistry/chemical-mime-data/metadata.xml b/sci-chemistry/chemical-mime-data/metadata.xml
index 4b1d7b55c844..25c4b2b47106 100644
--- a/sci-chemistry/chemical-mime-data/metadata.xml
+++ b/sci-chemistry/chemical-mime-data/metadata.xml
@@ -1,13 +1,12 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-<herd>sci-chemistry</herd>
-<maintainer>
-<email>je_fro@gentoo.org</email>
-<name>Jeff Gardner</name>
-</maintainer>
-<longdescription lang="en">
+  <herd>sci-chemistry</herd>
+  <maintainer>
+    <email>je_fro@gentoo.org</email>
+    <name>Jeff Gardner</name>
+  </maintainer>
+  <longdescription lang="en">
 A collection of data files to add support for chemical MIME types.
 </longdescription>
 </pkgmetadata>
-