diff options
| -rw-r--r-- | sci-biology/embassy-construct/ChangeLog | 33 | ||||
| -rw-r--r-- | sci-biology/embassy-construct/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/embassy-construct/embassy-construct-1.0.0.ebuild | 11 | ||||
| -rw-r--r-- | sci-biology/embassy-construct/files/digest-embassy-construct-1.0.0 | 2 | ||||
| -rw-r--r-- | sci-biology/embassy-construct/metadata.xml | 9 | ||||
| -rw-r--r-- | sci-biology/emboss/ChangeLog | 5 | ||||
| -rw-r--r-- | sci-biology/emboss/emboss-2.10.0.ebuild | 60 | ||||
| -rw-r--r-- | sci-biology/emboss/files/digest-emboss-2.10.0 | 1 | ||||
| -rw-r--r-- | sci-biology/prosite/ChangeLog | 5 | ||||
| -rw-r--r-- | sci-biology/prosite/files/digest-prosite-19.6 | 1 | ||||
| -rw-r--r-- | sci-biology/prosite/prosite-19.6.ebuild | 39 |
11 files changed, 8 insertions, 162 deletions
diff --git a/sci-biology/embassy-construct/ChangeLog b/sci-biology/embassy-construct/ChangeLog deleted file mode 100644 index 15c488650dd5..000000000000 --- a/sci-biology/embassy-construct/ChangeLog +++ /dev/null @@ -1,33 +0,0 @@ -# ChangeLog for sci-biology/embassy-construct -# Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-construct/ChangeLog,v 1.7 2005/08/07 21:41:10 ribosome Exp $ - - 07 Aug 2005; Olivier Fisette <ribosome@gentoo.org> - embassy-construct-1.0.0.ebuild: - Ported to the improved embassy.eclass. - - 27 Jul 2005; Lina Pezzella <j4rg0n@gentoo.org> - embassy-construct-1.0.0.ebuild: - Stable ppc-macos - - 26 Jun 2005; Lina Pezzella <j4rg0n@gentoo.org> - embassy-construct-1.0.0.ebuild: - Keyworded ~ppc-macos - - 24 Jun 2005; Joseph Jezak <josejx@gentoo.org> - embassy-construct-1.0.0.ebuild: - Marked ppc stable. - - 13 May 2005; Olivier Fisette <ribosome@gentoo.org> - embassy-construct-1.0.0.ebuild: - Added to x86. - - 06 May 2005; David Holm <dholm@gentoo.org> embassy-construct-1.0.0.ebuild: - Added to ~ppc. - -*embassy-construct-1.0.0 (22 Mar 2005) - - 22 Mar 2005; Olivier Fisette <ribosome@gentoo.org> +metadata.xml, - +embassy-construct-1.0.0.ebuild: - Initial import. - diff --git a/sci-biology/embassy-construct/Manifest b/sci-biology/embassy-construct/Manifest deleted file mode 100644 index 142f4a06cc68..000000000000 --- a/sci-biology/embassy-construct/Manifest +++ /dev/null @@ -1,4 +0,0 @@ -MD5 2eaca7da149a58998c933ba26936da59 ChangeLog 1037 -MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254 -MD5 350dc809bc66600c8d71d1a38647dde9 embassy-construct-1.0.0.ebuild 366 -MD5 9e9daba9b9de731f2ca2f60f7fc69960 files/digest-embassy-construct-1.0.0 134 diff --git a/sci-biology/embassy-construct/embassy-construct-1.0.0.ebuild b/sci-biology/embassy-construct/embassy-construct-1.0.0.ebuild deleted file mode 100644 index d32d93b3e57d..000000000000 --- a/sci-biology/embassy-construct/embassy-construct-1.0.0.ebuild +++ /dev/null @@ -1,11 +0,0 @@ -# Copyright 1999-2005 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-construct/embassy-construct-1.0.0.ebuild,v 1.8 2005/08/07 21:41:10 ribosome Exp $ - -EBOV="2.10.0" - -inherit embassy - -DESCRIPTION="Sequence alignment add-on package for EMBOSS" - -KEYWORDS="ppc ppc-macos x86" diff --git a/sci-biology/embassy-construct/files/digest-embassy-construct-1.0.0 b/sci-biology/embassy-construct/files/digest-embassy-construct-1.0.0 deleted file mode 100644 index 3cd6554cccf8..000000000000 --- a/sci-biology/embassy-construct/files/digest-embassy-construct-1.0.0 +++ /dev/null @@ -1,2 +0,0 @@ -MD5 4a48388ced7021a8ffece5166c40a364 EMBOSS-2.10.0.tar.gz 16262124 -MD5 a9c491132d02ddaf7ad0ac80f0249c02 CONSTRUCT-1.0.0.tar.gz 355234 diff --git a/sci-biology/embassy-construct/metadata.xml b/sci-biology/embassy-construct/metadata.xml deleted file mode 100644 index e9391a41a838..000000000000 --- a/sci-biology/embassy-construct/metadata.xml +++ /dev/null @@ -1,9 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer> - <email>ribosome@gentoo.org</email> - <name>Olivier Fisette</name> - </maintainer> - <herd>sci</herd> -</pkgmetadata> diff --git a/sci-biology/emboss/ChangeLog b/sci-biology/emboss/ChangeLog index 78264b88bb47..aaf5b94ef8c8 100644 --- a/sci-biology/emboss/ChangeLog +++ b/sci-biology/emboss/ChangeLog @@ -1,6 +1,9 @@ # ChangeLog for sci-biology/emboss # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/ChangeLog,v 1.21 2005/10/03 21:57:27 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/ChangeLog,v 1.22 2005/10/04 00:13:13 ribosome Exp $ + + 04 Oct 2005; Olivier Fisette <ribosome@gentoo.org> -emboss-2.10.0.ebuild: + Removed obsolete version. 03 Oct 2005; Olivier Fisette <ribosome@gentoo.org> emboss-3.0.0.ebuild: Stable on ppc-macos (with j4rg0n's permission, bug #102420). diff --git a/sci-biology/emboss/emboss-2.10.0.ebuild b/sci-biology/emboss/emboss-2.10.0.ebuild deleted file mode 100644 index b4af1b89849f..000000000000 --- a/sci-biology/emboss/emboss-2.10.0.ebuild +++ /dev/null @@ -1,60 +0,0 @@ -# Copyright 1999-2005 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/emboss-2.10.0.ebuild,v 1.7 2005/08/13 02:55:35 ribosome Exp $ - -DESCRIPTION="The European Molecular Biology Open Software Suite - A sequence analysis package" -HOMEPAGE="http://emboss.sourceforge.net/" -SRC_URI="ftp://ftp.uk.embnet.org/pub/EMBOSS/EMBOSS-${PV}.tar.gz" -LICENSE="GPL-2 LGPL-2" - -SLOT="0" -KEYWORDS="ppc ppc-macos ppc64 x86" -IUSE="X png minimal" - -DEPEND="X? ( virtual/x11 ) - png? ( - sys-libs/zlib - media-libs/libpng - >=media-libs/gd-1.8 - ) - !minimal? ( - sci-biology/primer3 - sci-biology/clustalw - )" - -PDEPEND="!minimal? ( - sci-biology/aaindex - sci-biology/cutg - sci-biology/prints - <=sci-biology/prosite-19.6 - sci-biology/rebase - sci-biology/transfac - )" - -S=${WORKDIR}/EMBOSS-${PV} - -src_compile() { - EXTRA_CONF="--includedir=${D}/usr/include/emboss" - ! use X && EXTRA_CONF="${EXTRA_CONF} --without-x" - ! use png && EXTRA_CONF="${EXTRA_CONF} --without-pngdriver" - - econf ${EXTRA_CONF} || die - # Do not install the JEMBOSS component (the --without-java configure option - # does not work). JEMBOSS will be available as a separate package. - sed -i -e 's/SUBDIRS = plplot ajax nucleus emboss test doc jemboss/SUBDIRS = plplot ajax nucleus emboss test doc/' Makefile || die - emake || die -} - -src_install() { - einstall || die - dodoc AUTHORS ChangeLog FAQ NEWS README THANKS - - # Install env file for setting libplplot and acd files path. - insinto /etc/env.d - newins ${FILESDIR}/22emboss-r1 22emboss - - # Symlink preinstalled docs to /usr/share/doc. - dosym /usr/share/EMBOSS/doc/manuals /usr/share/doc/${PF}/manuals - dosym /usr/share/EMBOSS/doc/programs /usr/share/doc/${PF}/programs - dosym /usr/share/EMBOSS/doc/tutorials /usr/share/doc/${PF}/tutorials -} diff --git a/sci-biology/emboss/files/digest-emboss-2.10.0 b/sci-biology/emboss/files/digest-emboss-2.10.0 deleted file mode 100644 index 7b973e38a9d7..000000000000 --- a/sci-biology/emboss/files/digest-emboss-2.10.0 +++ /dev/null @@ -1 +0,0 @@ -MD5 4a48388ced7021a8ffece5166c40a364 EMBOSS-2.10.0.tar.gz 16262124 diff --git a/sci-biology/prosite/ChangeLog b/sci-biology/prosite/ChangeLog index 0513c49ee927..338b77a5c720 100644 --- a/sci-biology/prosite/ChangeLog +++ b/sci-biology/prosite/ChangeLog @@ -1,6 +1,9 @@ # ChangeLog for sci-biology/prosite # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/ChangeLog,v 1.49 2005/10/03 21:57:27 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/ChangeLog,v 1.50 2005/10/04 00:13:13 ribosome Exp $ + + 04 Oct 2005; Olivier Fisette <ribosome@gentoo.org> -prosite-19.6.ebuild: + Removed obsolete version. 03 Oct 2005; Olivier Fisette <ribosome@gentoo.org> prosite-19.10.ebuild: Stable on ppc-macos (with j4rg0n's permission, bug #102420). diff --git a/sci-biology/prosite/files/digest-prosite-19.6 b/sci-biology/prosite/files/digest-prosite-19.6 deleted file mode 100644 index 5a4d7db13e96..000000000000 --- a/sci-biology/prosite/files/digest-prosite-19.6 +++ /dev/null @@ -1 +0,0 @@ -MD5 98e086d8e6d9d7bf0053055c336eae06 prosite-19.6.tar.bz2 3588111 diff --git a/sci-biology/prosite/prosite-19.6.ebuild b/sci-biology/prosite/prosite-19.6.ebuild deleted file mode 100644 index 126ef702ca07..000000000000 --- a/sci-biology/prosite/prosite-19.6.ebuild +++ /dev/null @@ -1,39 +0,0 @@ -# Copyright 1999-2005 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-19.6.ebuild,v 1.5 2005/08/29 16:00:30 j4rg0n Exp $ - -DESCRIPTION="A protein families and domains database" -HOMEPAGE="http://ca.expasy.org/prosite" -SRC_URI="mirror://gentoo/${P}.tar.bz2" -LICENSE="swiss-prot" -SLOT="0" -KEYWORDS="ppc ppc-macos ppc64 x86" -IUSE="emboss minimal" -# Minimal build keeps only the indexed files (if applicable) and the documentation. -# The non-indexed database is not installed. - -DEPEND="emboss? ( sci-biology/emboss )" - -src_compile() { - if use emboss; then - mkdir PROSITE - echo - einfo "Indexing PROSITE for usage with EMBOSS." - EMBOSS_DATA="." prosextract -auto -infdat ${S} || die \ - "Indexing PROSITE failed." - echo - fi -} - -src_install() { - if ! use minimal; then - insinto /usr/share/${PN} - doins ${PN}.{doc,dat,lis} || die - fi - dodoc *.txt || die - dohtml *.htm || die - if use emboss; then - insinto /usr/share/EMBOSS/data/PROSITE - doins PROSITE/* || die - fi -} |