diff options
Diffstat (limited to 'sci-biology/allpaths/allpaths-3.1.ebuild')
| -rw-r--r-- | sci-biology/allpaths/allpaths-3.1.ebuild | 32 |
1 files changed, 17 insertions, 15 deletions
diff --git a/sci-biology/allpaths/allpaths-3.1.ebuild b/sci-biology/allpaths/allpaths-3.1.ebuild index 31ac65d432a1..7b271ade0f05 100644 --- a/sci-biology/allpaths/allpaths-3.1.ebuild +++ b/sci-biology/allpaths/allpaths-3.1.ebuild @@ -1,37 +1,39 @@ -# Copyright 1999-2010 Gentoo Foundation +# Copyright 1999-2012 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpaths/allpaths-3.1.ebuild,v 1.1 2010/01/26 20:43:21 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpaths/allpaths-3.1.ebuild,v 1.2 2012/08/30 07:32:21 jlec Exp $ -EAPI="2" +EAPI=4 inherit base DESCRIPTION="De novo assembly of whole-genome shotgun microreads" HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd" -SRC_URI="ftp://ftp.broad.mit.edu/pub/crd/ALLPATHS/Release-3-0/allpaths-${PV}.tgz +SRC_URI=" + ftp://ftp.broad.mit.edu/pub/crd/ALLPATHS/Release-3-0/allpaths-${PV}.tgz ftp://ftp.broad.mit.edu/pub/crd/ALLPATHS/Release-3-0/AllPathsV3_Manual_r1.0.docx" LICENSE="Whitehead-MIT" SLOT="3" IUSE="" -KEYWORDS="~amd64" - -DEPEND=">=sys-devel/gcc-4.3.2" -RDEPEND="" +KEYWORDS="~amd64 ~x86" S="${WORKDIR}/AllPaths" +PATCHES=( "${FILESDIR}"/${P}-gcc4.7.patch ) + src_compile() { base_src_compile - emake install_scripts || die + emake install_scripts } src_install() { - exeinto /usr/share/${P}/bin + exeinto /usr/libexec/${P}/ find bin -type f -executable | xargs doexe || die - echo "PATH=\"/usr/share/${P}/bin\"" > "${S}/99${P}" - doenvd "${S}/99${P}" || die - dosym /usr/share/${P}/bin/RunAllPaths3G /usr/bin/RunAllPaths3G || die - insinto /usr/share/doc/${PF} - doins "${DISTDIR}/AllPathsV3_Manual_r1.0.docx" + + echo "PATH=\"/usr/libexec/${P}/\"" > "${S}/50${P}" + doenvd "${S}/50${P}" || die + + dosym /usr/libexec/${P}/RunAllPaths3G /usr/bin/RunAllPaths3G + + dodoc "${DISTDIR}/AllPathsV3_Manual_r1.0.docx" } |