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# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.49.ebuild,v 1.6 2009/08/26 12:38:25 klausman Exp $
NEED_PYTHON=2.3
inherit distutils eutils
DESCRIPTION="Biopython - Python modules for computational molecular biology"
LICENSE="as-is"
HOMEPAGE="http://www.biopython.org"
SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz"
SLOT="0"
IUSE="mysql postgres"
KEYWORDS="alpha amd64 ppc sparc x86"
DEPEND="dev-python/numpy
>=dev-python/reportlab-2.0
sys-devel/flex"
RDEPEND="${DEPEND}
mysql? ( dev-python/mysql-python )
postgres? ( dev-python/psycopg )"
src_unpack() {
unpack ${A}
cd "${S}"
epatch "${FILESDIR}/${P}-flex.patch"
}
src_compile() {
distutils_src_compile
}
src_install() {
DOCS="CONTRIB DEPRECATED NEWS README"
distutils_src_install
dodir "/usr/share/doc/${PF}"
cp -r Doc/* "${D}/usr/share/doc/${PF}/" || \
die "Failed to install documentation."
dodir "/usr/share/${PN}"
rm Tests/*.pyc || \
die "Failed to remove precompiled test files."
cp -r --preserve=mode Scripts Tests "${D}/usr/share/${PN}/" || \
die "Failed to install shared files."
}
src_test() {
cd "${S}/Tests"
PYTHONPATH="${PYTHONPATH}:${S}" \
python run_tests.py --no-gui || die "Tests failed."
}
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