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# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/lagan/lagan-2.0.ebuild,v 1.1 2009/02/27 00:23:49 weaver Exp $
inherit eutils
MY_PV="20"
DESCRIPTION="LAGAN, Multi-LAGAN, Shuffle-LAGAN, Supermap: Whole-genome multiple alignment of genomic DNA"
HOMEPAGE="http://lagan.stanford.edu/lagan_web/index.shtml"
SRC_URI="http://lagan.stanford.edu/lagan_web/lagan${MY_PV}.tar.gz"
LICENSE="GPL-2"
SLOT="0"
IUSE=""
KEYWORDS="~amd64 ~x86"
DEPEND=""
RDEPEND=""
S="${WORKDIR}/lagan${MY_PV}"
src_unpack() {
unpack ${A}
sed -i "/use Getopt::Long;/ i use lib \"/usr/share/${PN}/lib\";" "${S}/supermap.pl" || die
epatch "${FILESDIR}"/${P}-*.patch
}
src_install() {
dobin lagan.pl slagan.pl mlagan
rm lagan.pl slagan.pl utils/Utils.pm
dodir /usr/share/${PN}/lib
insinto /usr/share/${PN}/lib
doins Utils.pm
exeinto /usr/share/${PN}/utils
doexe utils/*
exeinto /usr/share/${PN}
doexe *.pl anchors chaos glocal order prolagan
insinto /usr/share/${PN}
doins *.txt
dosym /usr/share/${PN}/supermap.pl /usr/bin/supermap
dosym /usr/bin/lagan.pl /usr/bin/lagan
dosym /usr/bin/slagan.pl /usr/bin/slagan
echo "LAGAN_DIR=\"/usr/share/${PN}\"" > ${S}/99${PN}
doenvd "${S}/99${PN}"
dodoc Readmes/README.*
}
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