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# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/recon/recon-1.06-r2.ebuild,v 1.1 2012/08/26 13:01:44 jlec Exp $
EAPI="4"
inherit eutils toolchain-funcs
DESCRIPTION="Automated de novo identification of repeat families from genomic sequences"
HOMEPAGE="http://selab.janelia.org/recon.html http://www.repeatmasker.org/RepeatModeler.html"
SRC_URI="http://www.repeatmasker.org/RECON${PV}.tar.gz"
LICENSE="GPL-2"
SLOT="0"
IUSE="examples"
KEYWORDS="~amd64 ~x86"
S="${WORKDIR}/RECON${PV}"
src_prepare() {
epatch \
"${FILESDIR}"/${PV}-buffer-overflow.patch \
"${FILESDIR}"/${P}-respect.patch
sed -i 's|$path = "";|$path = "/usr/libexec/'${PN}'";|' scripts/recon.pl || die
tc-export CC
}
src_compile() {
emake -C src
}
src_install() {
dobin scripts/*
exeinto /usr/libexec/${PN}
doexe src/{edgeredef,eledef,eleredef,famdef,imagespread}
dodoc 00README
insinto /usr/share/${PN}
use examples && doins -r Demos
}
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