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# Copyright 1999-2007 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-4.96.ebuild,v 1.5 2007/07/02 15:24:09 peper Exp $
inherit toolchain-funcs flag-o-matic
DESCRIPTION="A multiple sequence alignment package"
LICENSE="t-coffee"
HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"
SRC_URI="http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz"
SLOT="0"
IUSE=""
KEYWORDS="~ppc x86"
RESTRICT="mirror"
DEPEND="sci-biology/clustalw"
TCDIR="${WORKDIR}/T-COFFEE_distribution_Version_${PV}"
S="${TCDIR}/t_coffee_source"
src_unpack() {
unpack ${A}
cd "${S}"
sed -e "s/CC = cc/CC = $(tc-getCC) ${CFLAGS}/" -i makefile || die \
"Failed to patch makefile."
}
die_compile() {
echo
eerror "If you experience an internal compiler error (consult the above"
eerror "messages), try compiling t-coffee using very modest compiler flags."
eerror "See bug #114745 on the Gentoo Bugzilla for more details."
die "Compilation failed"
}
src_compile() {
[[ $(gcc-version) == "3.4" ]] && append-flags -fno-unit-at-a-time
[[ $(gcc-version) == "4.1" ]] && append-flags -fno-unit-at-a-time
make all || die_compile
}
src_install() {
dobin "${TCDIR}"/bin/t_coffee || die "Failed to install program."
insinto /usr/share/${PN}/lib/html
doins "${TCDIR}"/html/* || die "Failed to install Web interface files."
cd "${TCDIR}"/doc
dodoc aln_compare.doc.txt README4T-COFFEE seq_reformat.doc.txt \
t_coffee_technical.txt t_coffee_tutorial.txt || die \
"Failed to install text documentation."
dohtml t_coffee_technical.htm t_coffee_tutorial.htm || die \
"Failed to install HTML documentation."
insinto /usr/share/doc/${PF}
doins t_coffee.pdf t_coffee_technical.doc t_coffee_tutorial.doc || die \
"Failed to install DOC and PDF documentation."
insinto /usr/share/${PN}/example
doins "${TCDIR}"/example/* || die "Failed to install example files."
}
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