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# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/velvet-0.7.47.ebuild,v 1.1 2009/07/27 20:30:59 weaver Exp $
EAPI="2"
MY_P="${PN}_${PV}"
DESCRIPTION="A sequence assembler for very short reads"
HOMEPAGE="http://www.ebi.ac.uk/~zerbino/velvet/"
SRC_URI="http://www.ebi.ac.uk/~zerbino/velvet/${MY_P}.tgz"
LICENSE="GPL-2"
SLOT="0"
IUSE=""
KEYWORDS="~amd64 ~x86"
DEPEND=""
RDEPEND="${DEPEND}"
S="${WORKDIR}/${MY_P}"
src_prepare() {
rm -rf "${S}"/third-party/zlib*
sed -i -e '/\(CFLAGS\|LDFLAGS\|Z_LIB_DIR\|Z_LIB_FILES\) *= */d' \
-e '1 a CFLAGS+= -Wall' -e '1 a LDFLAGS+= -lm -lz' \
-e '/default :/ s/zlib//' -e '/color :/ s/zlib//' \
"${S}"/Makefile || die
sed -i -e '/zlib.h/d' -e '1 i #include <zlib.h>' "${S}"/src/readSet.c || die
}
src_compile() {
emake -j1 || die
emake -j1 color || die
}
src_install() {
dobin velvet{g,h,g_de,h_de} || die
insinto /usr/share/${PN}
doins -r contrib || die
dodoc Manual.pdf CREDITS.txt
}
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