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# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/coot-0.6.1.ebuild,v 1.7 2011/01/12 08:19:21 jlec Exp $
EAPI="3"
PYTHON_DEPEND="2"
inherit autotools base eutils python versionator
MY_S2_PV=$(replace_version_separator 2 - ${PV})
MY_S2_P=${PN}-${MY_S2_PV/pre1/pre-1}
MY_S_P=${MY_S2_P}-${PR/r/revision-}
MY_PV=${PV}
MY_P=${PN}-${MY_PV}
DESCRIPTION="Crystallographic Object-Oriented Toolkit for model building, completion and validation"
HOMEPAGE="http://www.biop.ox.ac.uk/coot/"
SRC_URI="
http://www.biop.ox.ac.uk/coot/software/source/releases/${MY_P}.tar.gz
test? ( mirror://gentoo/greg-data-${PV}.tar.gz )"
SLOT="0"
LICENSE="GPL-3"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="test"
SCIDEPS="
>=sci-libs/ccp4-libs-6.1
>=sci-libs/clipper-20090520
>=sci-libs/coot-data-2
>=sci-libs/gsl-1.3
sci-libs/mmdb
sci-chemistry/reduce
sci-chemistry/refmac
sci-chemistry/probe"
XDEPS="
gnome-base/libgnomecanvas
gnome-base/librsvg
media-libs/libpng
media-libs/freeglut
>=x11-libs/gtk+-2.2
x11-libs/gtkglext"
SCHEMEDEPS="
dev-scheme/net-http
dev-scheme/guile-gui
>=dev-scheme/guile-lib-0.1.6
dev-scheme/guile-www
~x11-libs/guile-gtk-2.1"
RDEPEND="
${SCIDEPS}
${XDEPS}
${SCHEMEDEPS}
dev-python/pygtk
>=dev-libs/gmp-4.2.2-r2
>=net-misc/curl-7.19.6
net-dns/libidn"
DEPEND="${RDEPEND}
dev-lang/swig
sys-devel/bc
test? ( dev-scheme/greg )"
S="${WORKDIR}/${MY_P}"
#S="${WORKDIR}/${MY_S2_P}"
pkg_setup() {
python_set_active_version 2
}
src_prepare() {
base_src_prepare
# Link against single-precision fftw
sed -i \
-e "s:lfftw:lsfftw:g" \
-e "s:lrfftw:lsrfftw:g" \
"${S}"/macros/clipper.m4
epatch "${FILESDIR}"/${PV}-libpng14.patch
eautoreconf
}
src_configure() {
# All the --with's are used to activate various parts.
# Yes, this is broken behavior.
econf \
--includedir='${prefix}/include/coot' \
--with-gtkcanvas-prefix="${EPREFIX}"/usr \
--with-clipper-prefix="${EPREFIX}"/usr \
--with-mmdb-prefix="${EPREFIX}"/usr \
--with-ssmlib-prefix="${EPREFIX}"/usr \
--with-gtkgl-prefix="${EPREFIX}"/usr \
--with-guile \
--with-python="${EPREFIX}"/usr \
--with-guile-gtk \
--with-gtk2 \
--with-pygtk
}
src_compile() {
emake || die "emake failed"
python_convert_shebangs $(python_get_version) src/coot_gtk2.py
cp "${S}"/src/coot_gtk2.py python/coot.py || die
}
src_test() {
mkdir "${T}"/coot_test
export COOT_STANDARD_RESIDUES="${S}/standard-residues.pdb"
export COOT_SCHEME_DIR="${S}/scheme/"
export COOT_RESOURCES_FILE="${S}/cootrc"
export COOT_PIXMAPS_DIR="${S}/pixmaps"
export COOT_DATA_DIR="${S}"
export COOT_PYTHON_DIR="${S}/python"
export PYTHONPATH="${COOT_PYTHON_DIR}:${PYTHONPATH}"
export PYTHONHOME="${EPREFIX}"/usr
export CCP4_SCR="${T}"/coot_test
export CLIBD_MON="${EPREFIX}/usr/share/ccp4/data/monomers/"
export COOT_TEST_DATA_DIR="${WORKDIR}"/data/greg-data
cat > command-line-greg.scm <<- EOF
(use-modules (ice-9 greg))
(set! greg-tools (list "greg-tests"))
(set! greg-debug #t)
(set! greg-verbose 5)
(let ((r (greg-test-run)))
(if r
(coot-real-exit 0)
(coot-real-exit 1)))
EOF
einfo "Running test with following paths ..."
einfo "COOT_STANDARD_RESIDUES $COOT_STANDARD_RESIDUES"
einfo "COOT_SCHEME_DIR $COOT_SCHEME_DIR"
einfo "COOT_RESOURCES_FILE $COOT_RESOURCES_FILE"
einfo "COOT_PIXMAPS_DIR $COOT_PIXMAPS_DIR"
einfo "COOT_DATA_DIR $COOT_DATA_DIR"
einfo "COOT_PYTHON_DIR $COOT_PYTHON_DIR"
einfo "PYTHONPATH $PYTHONPATH"
einfo "PYTHONHOME $PYTHONHOME"
einfo "CCP4_SCR ${CCP4_SCR}"
einfo "CLIBD_MON ${CLIBD_MON}"
"${S}"/src/coot-real --no-graphics --script command-line-greg.scm || die
}
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