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# ChangeLog for sci-chemistry/gromacs
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v 1.51 2010/06/27 19:06:33 alexxy Exp $
*gromacs-4.0.7-r3 (27 Jun 2010)
27 Jun 2010; Alexey Shvetsov <alexxy@gentoo.org> -gromacs-4.0.7.ebuild,
-gromacs-4.0.7-r1.ebuild, +gromacs-4.0.7-r3.ebuild,
-files/gromacs-4.0.7-docdir.patch,
+files/gromacs-4.0.7_upstream2010-06-08.patch:
Added patches from upstream stable branch. Added ffamber ports. Also fixed
bugs #301854 and #284431. Big thank to Christoph Junghans
24 Jun 2010; Justin Lecher <jlec@gentoo.org> gromacs-3.3.1-r1.ebuild,
gromacs-3.3.3.ebuild:
Blocking sci-mathematics/num-utils, #257566
*gromacs-4.0.7-r1 (24 Jan 2010)
24 Jan 2010; Alexey Shvetsov <alexxy@gentoo.org> +gromacs-4.0.7-r1.ebuild,
+files/gromacs-4.0.9999-ccache.patch,
+files/gromacs-4.0.9999-configure-gfortran.patch,
+files/gromacs-4.0.9999-docdir.patch:
Fix bug #302048. thanks to Christoph Junghans
18 Jan 2010; Raúl Porcel <armin76@gentoo.org> gromacs-4.0.5.ebuild:
alpha stable
08 Dec 2009; Alexey Shvetsov <alexxy@gentoo.org>
+files/gromacs-4.0.7-docdir.patch:
Add missing patch. thanks to rei4dan
*gromacs-4.0.7 (07 Dec 2009)
07 Dec 2009; Alexey Shvetsov <alexxy@gentoo.org> +gromacs-4.0.7.ebuild:
Version bump
31 Oct 2009; Raúl Porcel <armin76@gentoo.org> gromacs-4.0.5.ebuild:
sparc stable wrt #260995
30 Oct 2009; Markus Meier <maekke@gentoo.org> gromacs-4.0.5.ebuild:
amd64/x86 stable, bug #260995
26 Sep 2009; Brent Baude <ranger@gentoo.org> gromacs-4.0.4.ebuild:
Marking gromacs-4.0.4 ppc64 for bug 260995
28 Aug 2009; William Hubbs <williamh@gentoo.org> metadata.xml:
new global use flag "zsh-completion"
15 May 2009; Markus Meier <maekke@gentoo.org> gromacs-4.0.4.ebuild:
amd64 stable, bug #260995
14 May 2009; Alexey Shvetsov <alexxy@gentoo.org> -gromacs-4.0.3.ebuild,
+gromacs-4.0.5.ebuild:
Drop old version; Fix keywords for 4.0.5. Sorry =)
*gromacs-4.0.5 (14 May 2009)
14 May 2009; Alexey Shvetsov <alexxy@gentoo.org> +gromacs-4.0.5.ebuild:
Bump new version with bugfixes. Bug #269754
14 May 2009; Christian Faulhammer <fauli@gentoo.org> gromacs-4.0.4.ebuild:
stable x86, bug 260995
13 May 2009; Tobias Klausmann <klausman@gentoo.org> gromacs-4.0.4.ebuild:
Stable on alpha, bug #260995
10 May 2009; Ferris McCormick <fmccor@gentoo.org> gromacs-4.0.4.ebuild:
Sparc stable, Bug #260995, which see for discussion.
10 May 2009; Alexey Shvetsov <alexxy@gentoo.org> gromacs-4.0.4.ebuild,
+files/gromacs-4.0.4-sparc-cyclecounter.patch:
Add upstream fix for sparc bug #260995
*gromacs-4.0.4 (20 Apr 2009)
20 Apr 2009; Alexey Shvetsov <alexxy@gentoo.org>
+files/gromacs-4.0.4-configure-gfortran.patch, metadata.xml,
-gromacs-4.0.ebuild, -gromacs-4.0.2.ebuild, +gromacs-4.0.4.ebuild:
Add new gromacs 4.0.4
08 Mar 2009; Markus Meier <maekke@gentoo.org> gromacs-4.0.3.ebuild:
amd64/x86 stable, bug #260995
22 Jan 2009; Jeff Gardner <je_fro@gentoo.org> +gromacs-4.0.3.ebuild:
Latest version.
*gromacs-4.0.2 (04 Jan 2009)
04 Jan 2009; Jeff Gardner <je_fro@gentoo.org> +gromacs-4.0.2.ebuild:
Latest version, thanks to Alexxy for the prod :)
*gromacs-4.0 (12 Oct 2008)
12 Oct 2008; Jeff Gardner <je_fro@gentoo.org> +gromacs-4.0.ebuild:
Latest version, closing bug #241474 thanks to Alexey Shvetsov
06 Oct 2008; Jeff Gardner <je_fro@gentoo.org> ChangeLog, Manifest:
Fixing changelog to reflect addition of gromacs-3.3.3.ebuild
*gromacs-3.3.3 (06 Oct 2008)
06 Oct 2008; Jeff Gardner <je_fro@gentoo.org> +gromacs-3.3.3.ebuild:
Latest stable version, thanks to Alexey Shvetsov, closing bug #193532
06 Aug 2008; Ulrich Mueller <ulm@gentoo.org> metadata.xml:
Add USE flag description to metadata wrt GLEP 56.
27 Jun 2008; Ulrich Mueller <ulm@gentoo.org> gromacs-3.3.1-r1.ebuild:
Change dependency from virtual/motif to x11-libs/openmotif, bug 224749.
23 Jun 2008; Jeff Gardner <je_fro@gentoo.org>
-files/gromacs-alpha-axp_asm.patch, -files/gromacs-ppc64-altivec.patch,
-gromacs-3.2.1-r1.ebuild, gromacs-3.3.1-r1.ebuild:
Moving disco manpage to g_disco, fixing bug 210083.
03 Jun 2008; Jeff Gardner <je_fro@gentoo.org> gromacs-3.3.1-r1.ebuild:
No altivec patching with this gromacs version. Thanks to Maik Nijhuis in
bug #224773.
13 Jun 2007; Raúl Porcel <armin76@gentoo.org> gromacs-3.3.1-r1.ebuild:
Modify the ebuild so it compiles on alpha and mark stable wrt #168182
17 Mar 2007; Steve Dibb <beandog@gentoo.org> gromacs-3.3.1-r1.ebuild:
amd64 stable, bug 168182
11 Mar 2007; Sven Wegener <swegener@gentoo.org> gromacs-3.3.1-r1.ebuild:
Properly indent src_compile, thanks to ferringb.
08 Mar 2007; Jason Wever <weeve@gentoo.org> gromacs-3.3.1-r1.ebuild:
Stable on SPARC wrt bug #168182.
07 Mar 2007; Jeff Gardner <je_fro@gentoo.org> gromacs-3.3.1-r1.ebuild:
Fix up the demo script so the xterms stay open.
24 Feb 2007; Raúl Porcel <armin76@gentoo.org> gromacs-3.3.1-r1.ebuild:
x86 stable wrt bug 168182
23 Feb 2007; Markus Rothe <corsair@gentoo.org> gromacs-3.3.1-r1.ebuild:
Stable on ppc64; bug #168182
07 Jan 2007; Danny van Dyk <kugelfang@gentoo.org> -gromacs-3.2.1.ebuild,
-gromacs-3.3.ebuild, -gromacs-3.3.1.ebuild:
QA: Removed unused versions.
20 Dec 2006; Jeff Gardner <je_fro@gentoo.org> gromacs-3.3.1-r1.ebuild:
Small fix of DEPEND
20 Dec 2006; Jeff Gardner <je_fro@gentoo.org> ChangeLog:
Many thanks to Rene Meier, Shvetsov Alexey Mathias Weigt, dawe, and Mike
Hlavac for their contributions to gromacs-3.3.1-r1.
*gromacs-3.3.1-r1 (17 Dec 2006)
17 Dec 2006; Jeff Gardner <je_fro@gentoo.org> +gromacs-3.3.1-r1.ebuild:
Fixup to address bugs 135146 118421 and 147614.
20 Sep 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml:
(#148281) Change herd to sci-chemistry from sci.
*gromacs-3.3.1 (08 Aug 2006)
08 Aug 2006; Markus Dittrich <markusle@gentoo.org> +gromacs-3.3.1.ebuild:
Version bump. Ebuild now inherits the fortran.eclass and forces
the use of g77 since gfortran is presently missing some of the
fortran intrinsics needed by gromacs. See bug #141672.
05 Aug 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml:
Remove myself as maintainer, anyone feel free to work on this, although I'll
continue to do so as well.
07 Jul 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml:
Update to my new email address.
25 Jun 2006; Donnie Berkholz <dberkholz@gentoo.org>; gromacs-3.2.1.ebuild,
gromacs-3.2.1-r1.ebuild, gromacs-3.3.ebuild:
(#116346) Change xml2 USE flag to xml.
07 May 2006; Markus Rothe <corsair@gentoo.org> gromacs-3.2.1-r1.ebuild:
Stable on ppc64; bug #89969
*gromacs-3.3 (14 Oct 2005)
14 Oct 2005; Donnie Berkholz <dberkholz@gentoo.org>; +gromacs-3.3.ebuild:
(#109184) Bump. Main change in ebuild is adding a check for fftw built w/
mpi if trying to build w/ mpi. One of the more interesting upstream changes
is the addition of x86-64 and ia64 assembly.
05 Aug 2005; <omkhar@gentoo.org> +files/gromacs-ppc64-altivec.patch,
gromacs-3.2.1-r1.ebuild:
Added patch back as binary due to metatags. Made sure patch only applies when ppc64 && altivec
*gromacs-3.2.1-r1 (04 Aug 2005)
04 Aug 2005; <omkhar@gentoo.org> +files/gromacs-ppc64-altivec.patch,
+gromacs-3.2.1-r1.ebuild:
Added ppc64 support and altivec support
24 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+gromacs-3.2.1.ebuild:
Moved from app-sci/gromacs to sci-chemistry/gromacs.
06 Jun 2004; Danny van Dyk <kugelfang@gentoo.org> gromacs-3.2.1.ebuild:
Marked stable on amd64.
22 Apr 2004; Donnie Berkholz <dberkholz@gentoo.org>;
-files/gromacs-3.2-all-static-fix.patch, -gromacs-3.1.4-r1.ebuild,
-gromacs-3.1.4-r2.ebuild, gromacs-3.2.1.ebuild, -gromacs-3.2.ebuild:
Mark 3.2.1 stable on x86. Remove old versions.
22 Apr 2004; Donnie Berkholz <dberkholz@gentoo.org>;
gromacs-3.1.4-r1.ebuild, gromacs-3.2.1.ebuild:
Add app-shells/tcsh to dependencies (#48691).
22 Apr 2004; Danny van Dyk <kugelfang@gentoo.org> gromacs-3.2.1.ebuild:
marked ~amd64
*gromacs-3.2.1 (02 Apr 2004)
02 Apr 2004; Donnie Berkholz <dberkholz@gentoo.org>; gromacs-3.2.1.ebuild:
Version bump, closes #44377.
*gromacs-3.2 (29 Feb 2004)
29 Feb 2004; Donnie Berkholz <dberkholz@gentoo.org>; gromacs-3.2.ebuild,
files/gromacs-3.2-all-static-fix.patch:
Version bump. New xml2 USE flag.
*gromacs-3.1.4-r2 (28 Feb 2004)
28 Feb 2004; Donnie Berkholz <dberkholz@gentoo.org>;
gromacs-3.1.4-r2.ebuild:
Closing bug #42989 by installing binaries to /usr/bin. Also discovered libs
needed to be installed to /usr/lib. Enabled assembly for Alphas too, if any
Alpha user ever tries this.
04 Oct 2003; Donnie Berkholz <dberkholz@gentoo.org>; gromacs-3.1.3.ebuild,
gromacs-3.1.4.ebuild:
Pulling old versions.
04 Oct 2003; Donnie Berkholz <dberkholz@gentoo.org>;
gromacs-3.1.4-r1.ebuild:
Fixing fftw dep. Won't compile against fftw-3 yet, in part because it looks
for fftw3.h instead of fftw.h, and in part because MPI doesn't work in fftw-3
yet.
*gromacs-3.1.4-r1 (23 Mar 2003)
23 Mar 2003; George Shapovalov <george@gentoo.org> gromacs-3.1.4-r1.ebuild :
added mpi support, lam-mpi is the only working implementation at the moment.
!IMPORTANT!:
Since portage cannot at present check whether optional dependencies of dependencies were turned on,
please check yourself that gromacs and fftw have identical mpi setting.
Generally USE="mpi" emerge gromacs should work fine if you did not install fftw previously (with
different mpi off for example).
*gromacs-3.1.4 (08 Nov 2002)
08 Nov 2002; George Shapovalov <george@gentoo.org> gromacs-3.1.4.ebuild, files/digest-gromacs-3.1.4 :
new version.
!!!IMPORTANT!!!
I changed --prefix to point to /usr for FHS compliance.
Now the binaries and the libs are getting installed into
/usr/i686-pc-linux-gnu/{bin,lib} correspondingly and the data into /usr/share/gromacs-${PV}
This seems to fit well in the existing direcory structure and does not conflict with gcc.
*gromacs-3.1.3 (27 Apr 2002)
27 Apr 2002; George Shapovalov <george@gentoo.org> all_files :
initial release.
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