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author | 2011-08-08 17:39:34 +0100 | |
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committer | 2011-08-08 17:39:34 +0100 | |
commit | d7487d09259cdb8797945c082ba9eb4ffc6bbb5d (patch) | |
tree | 525ee288f079776eb2bef42a5ce504761959e88f | |
parent | removed cholmod, metis bug (diff) | |
download | bicatali-d7487d09259cdb8797945c082ba9eb4ffc6bbb5d.tar.gz bicatali-d7487d09259cdb8797945c082ba9eb4ffc6bbb5d.tar.bz2 bicatali-d7487d09259cdb8797945c082ba9eb4ffc6bbb5d.zip |
in science overlay
-rw-r--r-- | sci-libs/atlas/ChangeLog | 57 | ||||
-rw-r--r-- | sci-libs/atlas/Manifest | 6 | ||||
-rw-r--r-- | sci-libs/atlas/atlas-3.8.4.ebuild | 281 | ||||
-rw-r--r-- | sci-libs/atlas/files/3.9.39-bfr-overflow.patch | 72 | ||||
-rw-r--r-- | sci-libs/atlas/metadata.xml | 16 |
5 files changed, 0 insertions, 432 deletions
diff --git a/sci-libs/atlas/ChangeLog b/sci-libs/atlas/ChangeLog deleted file mode 100644 index e17de12..0000000 --- a/sci-libs/atlas/ChangeLog +++ /dev/null @@ -1,57 +0,0 @@ -# ChangeLog for sci-libs/atlas -# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: $ - -*atlas-3.9.46 (25 Jul 2011) - - 25 Jul 2011; Sébastien Fabbro <bicatali@gentoo.org> -atlas-3.9.41.ebuild, - +atlas-3.9.46.ebuild: - Version bump. Removed die for cpufreq (bug #375193). - -*atlas-3.8.4 (23 May 2011) - - 23 May 2011; Sébastien Fabbro <bicatali@gentoo.org> -atlas-3.8.3.ebuild, - +atlas-3.8.4.ebuild: - Version bump of the stable branch - - 23 May 2011; Sébastien Fabbro <bicatali@gentoo.org> atlas-3.9.41.ebuild: - Forces gcc whenever a version of gcc is used, avoiding upstream bug - -*atlas-3.9.41 (17 May 2011) - - 17 May 2011; Sébastien Fabbro <bicatali@gentoo.org> -atlas-3.9.40-r1.ebuild, - +atlas-3.9.41.ebuild: - Version bump. Removed archdef 0 causing undefined symbols - -*atlas-3.9.40-r1 (29 Apr 2011) - - 29 Apr 2011; Sébastien Fabbro <bicatali@gentoo.org> -atlas-3.9.40.ebuild, - +atlas-3.9.40-r1.ebuild: - Reworked entirely linking procedure: now explicitely treat each module blas, - cblas and lapack separately - -*atlas-3.9.40 (27 Apr 2011) - - 27 Apr 2011; Sébastien Fabbro <bicatali@gentoo.org> -atlas-3.9.39.ebuild, - +atlas-3.9.40.ebuild: - Bump - - 15 Apr 2011; Justin Lecher <jlec@gentoo.org> atlas-3.9.39.ebuild: - Correct syntax for cpufrq check being all CPUs under performance controll - -*atlas-3.9.39 (21 Mar 2011) - - 21 Mar 2011; Sébastien Fabbro <bicatali@gentoo.org> atlas-3.9.39.ebuild: - Version bump. Seriously refactored the ebuild. Now choose posix threads over - openmp when the two are enabled - -*atlas-3.9.32 (05 Dec 2010) - - 05 Dec 2010; Sébastien Fabbro <bicatali@gentoo.org> atlas-3.8.3.ebuild, - +atlas-3.9.32.ebuild: - Version bump. Still beta. - - 03 Dec 2010; Sébastien Fabbro <bicatali@gentoo.org> atlas-3.8.3.ebuild, - metadata.xml: - Initial import. Ebuilds merged from blas-atlas and lapack-atlas. - diff --git a/sci-libs/atlas/Manifest b/sci-libs/atlas/Manifest deleted file mode 100644 index eee6c02..0000000 --- a/sci-libs/atlas/Manifest +++ /dev/null @@ -1,6 +0,0 @@ -AUX 3.9.39-bfr-overflow.patch 2755 RMD160 4f8204eee5b429e9d3db1c211af80396a575fc87 SHA1 9b59bd8a7bb55e7ed4138731262d17532949ece0 SHA256 19cdab39e50e06de0bdc2a080642388fec3a16c826657621f15fc294268d3438 -DIST atlas3.8.4.tar.bz2 2534071 RMD160 fa2828468459213fcf3f1ae4fd26671ba32f4776 SHA1 ef92bcbc4bec096b34ed7a0d29119d84c973df0c SHA256 0f7720fb16fa4b8b8a192ea791e57569546db6f5f016cf3caaee30a9d94583bf -DIST lapack-3.3.1.tgz 4945204 RMD160 5e9d90122110045e07351f3ab30dc4e2b43d52db SHA1 3ce437e05f0e9a3c8148ec41922f6efeef0ebdac SHA256 56821ab51c29369a34e5085728f92c549a9aa926f26acf7eeac87b61eed329e4 -EBUILD atlas-3.8.4.ebuild 7382 RMD160 3d3dca9c817b42e4c8d6ec95f52dc0290340d0eb SHA1 c8ef9142745b320d2f7e2e7da35b25d00ec83d6b SHA256 2516f3ed8a750904fecf0a58ec9e91f63ec98bdb19a17f923908d935fe908720 -MISC ChangeLog 1870 RMD160 9cf8d9bb466fef4e2a299fdbc3e0733bf79d9bfa SHA1 a9a8f2f12b153dc3faaef2563d5751306bcab441 SHA256 54a249ef95c2e0f7b987dd17fc9f2038e0baa36551566131d9197c60a9b98cc0 -MISC metadata.xml 726 RMD160 e43f5ea9c594bbe2174f6640bbfdccd8b17d4a68 SHA1 0ab8c05e7925b4716d8c94acd952bf3ab85165cb SHA256 27ef4eee7e645ad923644830d057db45d32342ad250ad903ff10915a9ca068fd diff --git a/sci-libs/atlas/atlas-3.8.4.ebuild b/sci-libs/atlas/atlas-3.8.4.ebuild deleted file mode 100644 index 8a54ce9..0000000 --- a/sci-libs/atlas/atlas-3.8.4.ebuild +++ /dev/null @@ -1,281 +0,0 @@ -# Copyright 1999-2011 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -EAPI=4 -inherit eutils toolchain-funcs versionator alternatives-2 - -LAPACKP=lapack-3.3.1 - -DESCRIPTION="Automatically Tuned Linear Algebra Software" -HOMEPAGE="http://math-atlas.sourceforge.net/" -SRC_URI="mirror://sourceforge/math-atlas/${PN}${PV}.tar.bz2 - fortran? ( lapack? ( http://www.netlib.org/lapack/${LAPACKP}.tgz ) )" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86 " -IUSE="fortran doc lapack static-libs threads" - -RDEPEND="fortran? ( virtual/fortran )" -DEPEND="${RDEPEND} - !prefix? ( sys-power/cpufrequtils )" - -S="${WORKDIR}/ATLAS" - -lapack_compile() { - cd "${WORKDIR}/${LAPACKP}" - local timer=INT_CPU_TIME - case $(tc-getFC) in - *gfortran|*g77) timer=INT_ETIME ;; - *ifort) timer=EXT_ETIME ;; - esac - cat > make.inc <<-EOF - FORTRAN = $(tc-getFC) - OPTS = ${FFLAGS} - NOOPT = -O0 - LOADER = $(tc-getFC) - LOADEROPTS = ${LDFLAGS} - ARCH = $(tc-getAR) - ARCHFLAGS = cr - RANLIB = $(tc-getRANLIB) - TIMER = ${timer} - EOF - if use static-libs; then - emake \ - LAPACKLIB=liblapack_nonpic.a \ - lapacklib || die "lapack static compilation failed" - emake clean - fi - emake \ - LAPACKLIB=liblapack_pic.a \ - OPTS="${FFLAGS} -fPIC" \ - NOOPT="-O0 -fPIC" \ - lapacklib || die "lapack pic compilation failed" -} - -atlas_configure() { - local mycc="$(tc-getCC)" - # http://sourceforge.net/tracker/?func=detail&aid=3301697&group_id=23725&atid=379483 - [[ ${mycc} == *gcc* ]] && mycc=gcc - local myconf=( - "--prefix=${ED}/usr" - "--libdir=${ED}/usr/$(get_libdir)" - "--incdir=${ED}/usr/include" - "--cc=${mycc}" - "-C ac ${mycc}" - "-D c -DWALL" - "-F ac '${CFLAGS}'" - "-Ss pmake '\$(MAKE) ${MAKEOPTS}'" - ) - - if use threads; then - myconf+=( "-t -1" ) - else - myconf+=( "-t 0" ) - fi - - if use amd64 || use ppc64 || use sparc; then - if [ ${ABI} = amd64 ] || [ ${ABI} = ppc64 ] || [ ${ABI} = sparc64 ] ; then - myconf+=( "-b 64" ) - elif [ ${ABI} = x86 ] || [ ${ABI} = ppc ] || [ ${ABI} = sparc32 ] ; then - myconf+=( "-b 32" ) - else - myconf+=( "-b 64" ) - fi - elif use ppc || use x86; then - myconf+=( "-b 32" ) - elif use ia64; then - myconf+=( "-b 64" ) - else #hppa alpha ... - myconf+=( "" ) - fi - if use fortran; then - myconf+=( - "-Si nof77 0" - "-C if $(tc-getFC)" - "-F if '${FFLAGS}'" - ) - use lapack && myconf+=( "--with-netlib-lapack=${LAPACKLIB}" ) - else - myconf+=( "-Si nof77 1" ) - fi - local confdir="${S}_${1}"; shift - myconf+=( $@ ) - mkdir "${confdir}" && cd "${confdir}" - "${S}"/configure ${myconf[@]} || die "configure in ${confdir} failed" -} - -atlas_compile() { - pushd "${S}_${1}" > /dev/null - # atlas does its own parallel builds - emake -j1 build - cd lib - emake libclapack.a - popd > /dev/null -} - -# transform a static archive into a shared library and install them -# atlas_install_libs <mylib.a> [extra link flags] -atlas_install_libs() { - local libname=$(basename ${1%.*}) - einfo "Installing ${libname}" - local soname=${libname}.so.$(get_major_version) - shift - pushd "${S}_shared"/lib > /dev/null - ${LINK:-$(tc-getCC)} ${LDFLAGS} -shared -Wl,-soname=${soname} \ - -Wl,--whole-archive ${libname}.a -Wl,--no-whole-archive \ - "$@" -o ${soname} || die "Creating ${soname} failed" - dolib.so ${soname} - ln -s ${soname} ${soname%.*} - dosym ${soname} /usr/$(get_libdir)/${soname%.*} - popd > /dev/null - use static-libs && dolib.a "${S}_static"/lib/${libname}.a -} - -# create and install a pkgconfig file -# atlas_install_pc <libname> <pkg name> [extra link flags] -atlas_install_pc() { - local libname=${1} ; shift - local pcname=${1} ; shift - cat <<-EOF > ${pcname}.pc - prefix=${EPREFIX}/usr - libdir=\${prefix}/$(get_libdir) - includedir=\${prefix}/include - Name: ${pcname} - Description: ${PN} ${pcname} - Version: ${PV} - URL: ${HOMEPAGE} - Libs: -L\${libdir} -l${libname} $@ - Cflags: -I\${includedir}/${PN} - ${PCREQ} - EOF - insinto /usr/$(get_libdir)/pkgconfig - doins ${pcname}.pc -} - -pkg_setup() { - if [[ -n $(type -P cpufreq-info) ]]; then - [[ -z $(cpufreq-info -d) ]] && return - local ncpu=$(LANG=C cpufreq-info | grep -c "analyzing CPU") - local cpu=0 - while [[ ${cpu} -lt ${ncpu} ]]; do - if ! $(LANG=C cpufreq-info -p -c ${cpu} | grep -q performance); then - ewarn "CPU $cpu is not set to performance" - ewarn "Run cpufreq-set -r -g performance as root" - fi - cpu=$(( cpu + 1 )) - done - else - ewarn "Please make sure to disable CPU throttling completely" - ewarn "during the compile of ${PN}. Otherwise, all ${PN}" - ewarn "generated timings will be completely random and the" - ewarn "performance of the resulting libraries will be degraded" - ewarn "considerably." - fi -} - -src_prepare() { - epatch "${FILESDIR}"/3.9.39-bfr-overflow.patch -} - -src_configure() { - if use fortran && use lapack; then - lapack_compile - LAPACKLIB="${WORKDIR}/${LAPACKP}/liblapack_pic.a" - fi - atlas_configure shared "-Fa alg -fPIC" - if use static-libs; then - use fortran && use lapack && \ - LAPACKLIB="${WORKDIR}/${LAPACKP}/liblapack_nonpic.a" - atlas_configure static - fi -} - -src_compile() { - atlas_compile shared - use static-libs && atlas_compile static -} - -src_test() { - cd "${S}_shared" - emake -j1 check - emake -j1 time -} - -src_install() { - cd "${S}_shared/lib" - # rename to avoid collision with other packages - local l - for l in {,c}{blas,lapack}; do - if [[ -e lib${l}.a ]]; then - mv lib{,atl}${l}.a - use static-libs && mv "${S}"_static/lib/lib{,atl}${l}.a - fi - done - - [[ -e libptcblas.a ]] && PTLIBS="-lpthread" - - # atlas - atlas_install_libs libatlas.a -lm ${PTLIBS} - - # cblas - atlas_install_libs libatlcblas.a -lm -L. -latlas - atlas_install_pc atlcblas atlas-cblas -lm -latlas - alternatives_for cblas atlas 0 \ - /usr/$(get_libdir)/pkgconfig/cblas.pc atlas-cblas.pc \ - /usr/include/cblas.h atlas/cblas.h - - # cblas threaded - if [[ -e libptcblas.a ]]; then - atlas_install_libs libptcblas.a -lm -L. -latlas ${PTLIBS} - atlas_install_pc ptcblas atlas-cblas-threads -lm -latlas ${PTLIBS} - alternatives_for cblas atlas-threads 0 \ - /usr/$(get_libdir)/pkgconfig/cblas.pc atlas-cblas-threads.pc \ - /usr/include/cblas.h atlas/cblas.h - fi - - if use lapack; then - PCREQ="Requires: cblas" - # clapack - atlas_install_libs libatlclapack.a -lm -L. -latlas -latlcblas - atlas_install_pc atlclapack atlas-clapack -lm -latlas - fi - - if use fortran; then - LINK=$(tc-getF77) PCREQ= - # blas - atlas_install_libs libf77blas.a -lm -L. -latlas - atlas_install_pc f77blas atlas-blas -lm -latlas - alternatives_for blas atlas 0 \ - /usr/$(get_libdir)/pkgconfig/blas.pc atlas-blas.pc - - # blas threaded - if [[ -e libptf77blas.a ]]; then - atlas_install_libs libptf77blas.a -lm -L. -latlas ${PTLIBS} - atlas_install_pc ptf77blas atlas-blas-threads -lm -latlas ${PTLIBS} - alternatives_for blas atlas-threads 0 \ - /usr/$(get_libdir)/pkgconfig/blas.pc atlas-blas-threads.pc - fi - - if use lapack; then - PCREQ="Requires: blas cblas" - # lapack - atlas_install_libs libatllapack.a \ - -lm -L. -latlas -latlcblas -lf77blas - atlas_install_pc atllapack atlas-lapack -lm -latlas - alternatives_for lapack atlas 0 \ - /usr/$(get_libdir)/pkgconfig/lapack.pc atlas-lapack.pc - fi - fi - - cd "${S}" - insinto /usr/include/${PN} - doins include/*.h - - cd "${S}/doc" - dodoc INDEX.txt AtlasCredits.txt ChangeLog - use doc && dodoc atlas*pdf cblas.pdf cblasqref.pdf - use doc && use fortran && dodoc f77blas*pdf - use doc && use fortran && use lapack && dodoc lapack*pdf -} diff --git a/sci-libs/atlas/files/3.9.39-bfr-overflow.patch b/sci-libs/atlas/files/3.9.39-bfr-overflow.patch deleted file mode 100644 index a4ae52a..0000000 --- a/sci-libs/atlas/files/3.9.39-bfr-overflow.patch +++ /dev/null @@ -1,72 +0,0 @@ - ATLAS/tune/blas/level1/axpysrch.c | 2 +- - ATLAS/tune/blas/level1/copysrch.c | 2 +- - ATLAS/tune/blas/level1/iamaxsrch.c | 2 +- - ATLAS/tune/blas/level1/scalsrch.c | 2 +- - ATLAS/tune/blas/level1/swapsrch.c | 2 +- - 5 files changed, 5 insertions(+), 5 deletions(-) - -diff --git a/ATLAS/tune/blas/level1/axpysrch.c b/ATLAS/tune/blas/level1/axpysrch.c -index 48bd756..f7f7845 100644 ---- a/ATLAS/tune/blas/level1/axpysrch.c -+++ b/ATLAS/tune/blas/level1/axpysrch.c -@@ -159,7 +159,7 @@ FILENODE *ReadFile(char pre) - { - FILE *fpin; - FILENODE *fbase, *fn, *fp=NULL; -- char ln[512], rout[256], auth[256], cc[256], ccflags[256]; -+ char ln[512], rout[256], auth[256], cc[256], ccflags[512]; - char *pcc, *pccflags; - int i, n, ID, alpha, beta, incX, incY; - -diff --git a/ATLAS/tune/blas/level1/copysrch.c b/ATLAS/tune/blas/level1/copysrch.c -index 3a9fcfc..736f501 100644 ---- a/ATLAS/tune/blas/level1/copysrch.c -+++ b/ATLAS/tune/blas/level1/copysrch.c -@@ -159,7 +159,7 @@ FILENODE *ReadFile(char pre) - { - FILE *fpin; - FILENODE *fbase, *fn, *fp=NULL; -- char ln[512], rout[256], auth[256], cc[256], ccflags[256]; -+ char ln[512], rout[256], auth[256], cc[256], ccflags[512]; - char *pcc, *pccflags; - int i, n, ID, alpha, beta, incX, incY; - -diff --git a/ATLAS/tune/blas/level1/iamaxsrch.c b/ATLAS/tune/blas/level1/iamaxsrch.c -index e9e766a..91b3acd 100644 ---- a/ATLAS/tune/blas/level1/iamaxsrch.c -+++ b/ATLAS/tune/blas/level1/iamaxsrch.c -@@ -159,7 +159,7 @@ FILENODE *ReadFile(char pre) - { - FILE *fpin; - FILENODE *fbase, *fn, *fp=NULL; -- char ln[512], rout[256], auth[256], cc[256], ccflags[256]; -+ char ln[512], rout[256], auth[256], cc[256], ccflags[512]; - char *pcc, *pccflags; - int i, n, ID, alpha, beta, incX, incY; - -diff --git a/ATLAS/tune/blas/level1/scalsrch.c b/ATLAS/tune/blas/level1/scalsrch.c -index 48be97e..35d724d 100644 ---- a/ATLAS/tune/blas/level1/scalsrch.c -+++ b/ATLAS/tune/blas/level1/scalsrch.c -@@ -159,7 +159,7 @@ FILENODE *ReadFile(char pre) - { - FILE *fpin; - FILENODE *fbase, *fn, *fp=NULL; -- char ln[512], rout[256], auth[256], cc[256], ccflags[256]; -+ char ln[512], rout[256], auth[256], cc[256], ccflags[512]; - char *pcc, *pccflags; - int i, n, ID, alpha, beta, incX, incY; - -diff --git a/ATLAS/tune/blas/level1/swapsrch.c b/ATLAS/tune/blas/level1/swapsrch.c -index 776d2d7..5281ae5 100644 ---- a/ATLAS/tune/blas/level1/swapsrch.c -+++ b/ATLAS/tune/blas/level1/swapsrch.c -@@ -159,7 +159,7 @@ FILENODE *ReadFile(char pre) - { - FILE *fpin; - FILENODE *fbase, *fn, *fp=NULL; -- char ln[512], rout[256], auth[256], cc[256], ccflags[256]; -+ char ln[512], rout[256], auth[256], cc[256], ccflags[512]; - char *pcc, *pccflags; - int i, n, ID, alpha, beta, incX, incY; - diff --git a/sci-libs/atlas/metadata.xml b/sci-libs/atlas/metadata.xml deleted file mode 100644 index 93eedfb..0000000 --- a/sci-libs/atlas/metadata.xml +++ /dev/null @@ -1,16 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> -<herd>sci</herd> -<longdescription lang='en'> - ATLAS is an approach for the automatic generation and optimization of - numerical software. Currently ATLAS supplies optimized versions for the - complete set of linear algebra kernels known as the Basic Linear Algebra - Subroutines (BLAS) for both c and F77 interfaces. It can also build - a subset of the linear algebra routine LAPACK library or the full - LAPACK using the reference LAPACK from Netlib. -</longdescription> -<use> - <flag name='xblas'>Build LAPACK with extra precision (needs <pkg>sci-libs/xblas</pkg>)</flag> -</use> -</pkgmetadata> |